Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 6
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Bra001815.1-P | |
| Bra031255.1-P |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G02380.1 | Bra001815.1-P | AT3G21150.1 | 21798944 |
| AT3G02380.1 | Bra031255.1-P | AT3G21150.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY71884 | Canola | nucleus | 91.59 | 99.66 |
| CDY71818 | Canola | nucleus | 88.16 | 95.61 |
| AT3G02380.1 | Thale cress | nucleus | 80.37 | 74.35 |
| Bra001043.1-P | Field mustard | nucleus | 51.4 | 72.37 |
| Bra023541.1-P | Field mustard | nucleus | 56.39 | 57.46 |
| Bra008668.1-P | Field mustard | nucleus | 57.32 | 54.6 |
| VIT_14s0083g00640.t01 | Wine grape | nucleus | 62.31 | 51.15 |
| KRH01455 | Soybean | nucleus | 53.58 | 48.86 |
| Solyc02g089500.2.1 | Tomato | nucleus | 21.5 | 48.59 |
| KRH45169 | Soybean | nucleus | 52.65 | 48.56 |
| GSMUA_Achr4P18680_001 | Banana | nucleus | 13.08 | 47.73 |
| PGSC0003DMT400026068 | Potato | nucleus | 60.12 | 47.65 |
| PGSC0003DMT400026065 | Potato | nucleus | 61.06 | 47.46 |
| Bra008669.1-P | Field mustard | nucleus | 53.89 | 47.27 |
| KRG93763 | Soybean | nucleus | 53.58 | 46.99 |
| KRH18308 | Soybean | nucleus | 52.34 | 46.54 |
| Bra032061.1-P | Field mustard | nucleus | 38.63 | 42.91 |
| GSMUA_Achr3P28130_001 | Banana | nucleus | 36.76 | 42.14 |
| GSMUA_Achr9P22690_001 | Banana | nucleus, plastid | 34.89 | 38.49 |
| Bra036528.1-P | Field mustard | nucleus | 40.81 | 37.97 |
| Bra009805.1-P | Field mustard | nucleus | 40.81 | 37.32 |
| Bra020425.1-P | Field mustard | nucleus, plastid | 37.07 | 34.8 |
| Bra002709.1-P | Field mustard | nucleus | 20.87 | 30.73 |
| Bra004423.1-P | Field mustard | nucleus | 21.81 | 20.96 |
| HORVU0Hr1G022380.1 | Barley | cytosol | 17.45 | 19.72 |
| Bra001264.1-P | Field mustard | nucleus | 21.18 | 19.37 |
| Bra030070.1-P | Field mustard | nucleus | 18.38 | 19.16 |
| Bra020709.1-P | Field mustard | nucleus | 20.25 | 18.52 |
| Bra040020.1-P | Field mustard | nucleus | 20.87 | 18.31 |
| Bra029666.1-P | Field mustard | nucleus | 21.81 | 18.13 |
| Bra023858.1-P | Field mustard | nucleus | 20.56 | 17.1 |
| Bra037499.1-P | Field mustard | nucleus | 17.76 | 16.52 |
| Bra010908.1-P | Field mustard | nucleus | 20.87 | 16.03 |
| Bra041077.1-P | Field mustard | nucleus | 19.63 | 15.44 |
Protein Annotations
| MapMan:15.5.1.2 | EnsemblPlantsGene:Bra021464 | EnsemblPlants:Bra021464.1 | EnsemblPlants:Bra021464.1-P | InterPro:CCT_domain | GO:GO:0000003 |
| GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | GO:GO:0007275 | GO:GO:0008150 | GO:GO:0008270 | GO:GO:0009658 | GO:GO:0009791 |
| GO:GO:0009908 | GO:GO:0009909 | GO:GO:0009987 | GO:GO:0016043 | InterPro:IPR000315 | InterPro:IPR010402 |
| UniProt:M4DY68 | PFAM:PF00643 | PFAM:PF06203 | PFscan:PS50119 | PFscan:PS51017 | PANTHER:PTHR31319 |
| PANTHER:PTHR31319:SF39 | SMART:SM00336 | UniParc:UPI000254490E | InterPro:Znf_B-box | SEG:seg | : |
Description
AT3G02380 (E=4e-110) COL2 | COL2 (constans-like 2); transcription factor/ zinc ion binding
Coordinates
chrA01:-:25119774..25120739
Molecular Weight (calculated)
35835.6 Da
IEP (calculated)
5.886
GRAVY (calculated)
-0.636
Length
321 amino acids
Sequence
(BLAST)
(BLAST)
001: MLKEESNESG GTRACDTCRS AACTIYREAD STYLCTTCDA RVHAAKRVRV CDSCESAPAA FFCKADAASL CTACDAEIHS ANPLARRHQR VPITSNSCGS
101: MATDGDNNVM MVSEEKEDAD EVASWLMLNP GKNNQNNGFL FGVEYLDLVD YSSSIDNQFE DQYSKYHRSF GGGEDGVVPL QLEESSTSHM QQSQHNFHLG
201: VNYGYSTEPQ YSYVSVVPES SSDTTVQHAK ETIDQVCGPP TQMVQQLTPA DREARVLRYR EKKKRRKFEK TIRYASRKAY AEVRPRIKGR FAKRIDMEAD
301: AEQLFSTSLM SNTSYGIVPS F
101: MATDGDNNVM MVSEEKEDAD EVASWLMLNP GKNNQNNGFL FGVEYLDLVD YSSSIDNQFE DQYSKYHRSF GGGEDGVVPL QLEESSTSHM QQSQHNFHLG
201: VNYGYSTEPQ YSYVSVVPES SSDTTVQHAK ETIDQVCGPP TQMVQQLTPA DREARVLRYR EKKKRRKFEK TIRYASRKAY AEVRPRIKGR FAKRIDMEAD
301: AEQLFSTSLM SNTSYGIVPS F
001: MLKEESNESG TWARACDTCR SAACTVYCEA DSAYLCTTCD ARVHAANRVA SRHERVRVCQ SCESAPAAFL CKADAASLCT ACDAEIHSAN PLARRHQRVP
101: ILPLSANSCS SMAPSETDAD NDEDDREVAS WLLPNPGKNI GNQNNGFLFG VEYLDLVDYS SSMDNQFEDN QYTHYQRSFG GDGVVPLQVE ESTSHLQQSQ
201: QNFQLGINYG FSSGAHYNNN SLKDLNHSAS VSSMDISVVP ESTASDITVQ HPRTTKETID QLSGPPTQVV QQLTPMEREA RVLRYREKKK TRKFDKTIRY
301: ASRKAYAEIR PRIKGRFAKR IETEAEAEEI FSTSLMSETG YGIVPSF
101: ILPLSANSCS SMAPSETDAD NDEDDREVAS WLLPNPGKNI GNQNNGFLFG VEYLDLVDYS SSMDNQFEDN QYTHYQRSFG GDGVVPLQVE ESTSHLQQSQ
201: QNFQLGINYG FSSGAHYNNN SLKDLNHSAS VSSMDISVVP ESTASDITVQ HPRTTKETID QLSGPPTQVV QQLTPMEREA RVLRYREKKK TRKFDKTIRY
301: ASRKAYAEIR PRIKGRFAKR IETEAEAEEI FSTSLMSETG YGIVPSF
Arabidopsis Description
COL2Zinc finger protein CONSTANS-LIKE 2 [Source:UniProtKB/Swiss-Prot;Acc:Q96502]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.