Factsheet for HORVU0Hr1G022380.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol
MultiLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
HORVU0Hr1G022380.1
HORVU1Hr1G090080.3
HORVU3Hr1G068840.2
HORVU3Hr1G092690.2
HORVU4Hr1G062890.2
HORVU6Hr1G072110.1
HORVU7Hr1G075150.4

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G15840.1	HORVU6Hr1G072110.1	AT1G21970.1	17138697
AT5G15840.1	HORVU3Hr1G092690.2	AT3G24650.1	10743655
AT5G15840.1	HORVU4Hr1G062890.2	AT3G48590.1	17138697
AT5G15850.1	HORVU3Hr1G068840.2	AT1G53090.1	16854975
AT5G15850.1	HORVU3Hr1G068840.2	AT1G53090.1	18812498
AT5G15850.1	HORVU1Hr1G090080.3	AT4G11110.1	16854975
AT5G15850.1	HORVU7Hr1G075150.4	AT5G14250.1	18812498
AT5G15850.1	HORVU0Hr1G022380.1	AT5G15850.1	18812498

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc02g089500.2.1	Tomato	nucleus	15.14	30.28
HORVU6Hr1G056000.2	Barley	nucleus	23.94	21.38
KRH45169	Soybean	nucleus	24.3	19.83
KRH01455	Soybean	nucleus	23.59	19.03
CDY71884	Canola	nucleus	19.37	18.64
CDY71818	Canola	nucleus	19.01	18.24
KRH18308	Soybean	nucleus	22.89	18.01
KRG93763	Soybean	nucleus	22.89	17.76
Bra021464.1-P	Field mustard	nucleus	19.72	17.45
Solyc02g089540.2.1	Tomato	nucleus	23.94	17.39
HORVU7Hr1G027560.1	Barley	nucleus	14.79	17.0
AT3G02380.1	Thale cress	nucleus	20.77	17.0
VIT_14s0083g00640.t01	Wine grape	nucleus	23.24	16.88
PGSC0003DMT400026065	Potato	nucleus	23.94	16.46
PGSC0003DMT400026068	Potato	nucleus	23.24	16.3
CDY26470	Canola	nucleus	19.01	16.22
Bra023541.1-P	Field mustard	nucleus	17.96	16.19
CDX85529	Canola	nucleus	17.96	16.09
CDX69493	Canola	nucleus	19.01	16.02
CDX90969	Canola	nucleus	17.96	15.89
Bra008668.1-P	Field mustard	nucleus	18.66	15.73
Solyc02g089520.1.1	Tomato	nucleus	22.54	15.65
AT5G15850.1	Thale cress	nucleus	19.01	15.21
AT5G15840.1	Thale cress	nucleus	19.01	14.48
CDY26469	Canola	nucleus	18.31	14.21
Bra008669.1-P	Field mustard	nucleus	18.31	14.21
CDX69494	Canola	nucleus	18.31	14.13
GSMUA_Achr3P28130_001	Banana	nucleus	13.03	13.21
GSMUA_Achr9P22690_001	Banana	nucleus, plastid	11.97	11.68
HORVU6Hr1G071950.2	Barley	nucleus	10.21	7.59
CDX91989	Canola	nucleus	4.93	6.14
Bra001043.1-P	Field mustard	nucleus	4.93	6.14
CDX74261	Canola	nucleus	4.58	5.7
HORVU4Hr1G048700.1	Barley	nucleus, plastid	7.75	4.72
HORVU2Hr1G020760.2	Barley	cytosol, mitochondrion	3.17	2.27
HORVU0Hr1G021050.5	Barley	cytosol	1.76	1.18
GSMUA_Achr4P18680_001	Banana	nucleus	0.0	0.0

Protein Annotations

EnsemblPlants:HORVU0Hr1G022380.1	EnsemblPlantsGene:HORVU0Hr1G022380	GO:GO:0003674	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0008270	InterPro:IPR000315	InterPro:Znf_B-box	ncoils:Coil	PANTHER:PTHR31319
PANTHER:PTHR31319:SF3	PFscan:PS50119	SEG:seg	SMART:SM00336	UniParc:UPI000B467396	UniProt:A0A287E7H8
MapMan:35.2	:	:	:	:	:

Description

No Description!

Coordinates

chrchrUn:-:114483861..114484778

Molecular Weight (calculated)

22090.8 Da

IEP (calculated)

4.783

GRAVY (calculated)

-0.089

Length

284 amino acids

Sequence
(BLAST)

001: ATSSXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXCD ARPAPARAGH ERVWACEVCE VSPAAVTCKA DAAVLCAACD ADIHHANPLA ERHVRVPIAP
101: IGSPEAAAVA AEAMMLCGAG DGDARADPDE VHDQLHHHGH GGMLNLNVEA GKEGGKMDYL FSDLVDPYLA VDFTRFAHAD SVVPNGVATA AVPAVVDLDF
201: PRGIGATPAP PSTPLPTPPH SLRTPTLXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XAGGGGDGGT EDAGRRVSCT RCEE

Best Arabidopsis Sequence Match ( AT5G57660.1 )
(BLAST)

001: MGFGLESIKS ISGGWGAAAR SCDACKSVTA AVFCRVDSAF LCIACDTRIH SFTRHERVWV CEVCEQAPAA VTCKADAAAL CVSCDADIHS ANPLASRHER
101: VPVETFFDSA ETAVAKISAS STFGILGSST TVDLTAVPVM ADDLGLCPWL LPNDFNEPAK IEIGTENMKG SSDFMFSDFD RLIDFEFPNS FNHHQNNAGG
201: DSLVPVQTKT EPLPLTNNDH CFDIDFCRSK LSAFTYPSQS VSHSVSTSSI EYGVVPDGNT NNSVNRSTIT SSTTGGDHQA SSMDREARVL RYREKRKNRK
301: FEKTIRYASR KAYAESRPRI KGRFAKRTET ENDDIFLSHV YASAAHAQYG VVPTF

Arabidopsis Description

COL5Zinc finger protein CONSTANS-LIKE 5 [Source:UniProtKB/Swiss-Prot;Acc:Q9FHH8]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.