CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 2
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG89094
KRG93763
KRG94317
KRG99861
KRH01455
KRH14801
KRH18308
KRH22086
KRH26155
KRH27246
KRH27856
KRH39527
KRH41290
KRH44613
KRH45169
KRH45468
KRH45469
KRH46807
KRH47291
KRH54177
KRH55271
KRH55275
KRH57651
KRH60015
KRH63772
KRH66068
KRH73341
KRH74431
KRH75634
KRH77627

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G02380.1	KRH44613	AT3G21150.1	21798944
AT3G02380.1	KRH47291	AT3G21150.1	21798944
AT5G15840.1	KRG89094	AT1G21970.1	17138697
AT5G15840.1	KRH66068	AT1G21970.1	17138697
AT5G15840.1	KRH14801	AT2G32950.1	18296627
AT5G15840.1	KRH73341	AT2G32950.1	18296627
AT5G15840.1	KRH14801	AT2G32950.1	18388858
AT5G15840.1	KRH73341	AT2G32950.1	18388858
AT5G15840.1	KRG99861	AT3G24650.1	10743655
AT5G15840.1	KRH46807	AT3G24650.1	10743655
AT5G15840.1	KRH54177	AT3G48590.1	17138697
AT5G15840.1	KRH63772	AT3G48590.1	17138697
AT5G15840.1	KRH39527	AT5G65683.1	21798944
AT5G15840.1	KRH45468	AT5G65683.1	21798944
AT5G15840.1	KRH45469	AT5G65683.1	21798944
AT5G15840.1	KRH74431	AT5G65683.1	21798944
AT5G15840.1	KRH75634	AT5G65683.1	21798944
AT5G15850.1	KRH22086	AT1G53090.1	16854975
AT5G15850.1	KRH26155	AT1G53090.1	16854975
AT5G15850.1	KRH27246	AT1G53090.1	16854975
AT5G15850.1	KRH55271	AT1G53090.1	16854975
AT5G15850.1	KRH55275	AT1G53090.1	16854975
AT5G15850.1	KRH22086	AT1G53090.1	18812498
AT5G15850.1	KRH26155	AT1G53090.1	18812498
AT5G15850.1	KRH27246	AT1G53090.1	18812498
AT5G15850.1	KRH55271	AT1G53090.1	18812498
AT5G15850.1	KRH55275	AT1G53090.1	18812498
AT5G15850.1	KRH14801	AT2G32950.1	18812498
AT5G15850.1	KRH73341	AT2G32950.1	18812498
AT5G15850.1	KRH27856	AT4G11110.1	16854975
AT5G15850.1	KRH41290	AT4G11110.1	16854975
AT5G15850.1	KRH60015	AT4G11110.1	16854975
AT5G15850.1	KRH77627	AT4G11110.1	16854975
AT5G15850.1	KRG94317	AT5G14250.1	18812498
AT5G15850.1	KRH57651	AT5G14250.1	18812498
AT5G15850.1	KRG93763	AT5G15850.1	18812498
AT5G15850.1	KRH01455	AT5G15850.1	18812498
AT5G15850.1	KRH18308	AT5G15850.1	18812498
AT5G15850.1	KRH45169	AT5G15850.1	18812498

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG93763	Soybean	nucleus	92.52	91.26
VIT_14s0083g00640.t01	Wine grape	nucleus	66.76	61.64
KRH01455	Soybean	nucleus	59.83	61.36
KRH45169	Soybean	nucleus	58.73	60.92
Solyc02g089500.2.1	Tomato	nucleus	23.55	59.86
AT3G02380.1	Thale cress	nucleus	54.29	56.48
AT5G15850.1	Thale cress	nucleus	53.74	54.65
Bra023541.1-P	Field mustard	nucleus	47.37	54.29
CDX85529	Canola	nucleus	47.65	54.26
PGSC0003DMT400026068	Potato	nucleus	60.39	53.83
PGSC0003DMT400026065	Potato	nucleus	61.5	53.75
CDX90969	Canola	nucleus	47.65	53.58
CDY71884	Canola	nucleus	43.49	53.22
CDY71818	Canola	nucleus	43.21	52.7
Bra021464.1-P	Field mustard	nucleus	46.54	52.34
CDY26470	Canola	nucleus	47.65	51.65
CDX69493	Canola	nucleus	47.92	51.34
Bra008668.1-P	Field mustard	nucleus	47.37	50.74
AT5G15840.1	Thale cress	nucleus	50.69	49.06
GSMUA_Achr4P18680_001	Banana	nucleus	11.91	48.86
KRH52295	Soybean	nucleus, plastid	40.72	47.42
KRH61628	Soybean	nucleus, plastid	40.44	47.25
GSMUA_Achr3P28130_001	Banana	nucleus	36.57	47.14
Bra008669.1-P	Field mustard	nucleus	47.37	46.72
CDY26469	Canola	nucleus	47.37	46.72
CDX69494	Canola	nucleus	47.37	46.47
GSMUA_Achr9P22690_001	Banana	nucleus, plastid	34.9	43.3
KRH18980	Soybean	nucleus	42.11	41.64
KRH02915	Soybean	nucleus	41.83	40.37
KRH72628	Soybean	nucleus	25.76	22.96
HORVU0Hr1G022380.1	Barley	cytosol	18.01	22.89
KRH16989	Soybean	nucleus	26.04	22.87
KRG89998	Soybean	nucleus	24.1	21.27
KRH31920	Soybean	nucleus	20.22	20.98
KRH68113	Soybean	nucleus	20.22	20.92
KRH71535	Soybean	nucleus	19.67	20.88
KRG96381	Soybean	nucleus	20.22	20.8
KRH17709	Soybean	nucleus	23.55	20.78
KRH06865	Soybean	nucleus	21.05	19.95
KRG94656	Soybean	nucleus	20.78	19.48
KRH26833	Soybean	nucleus	22.44	19.15
KRH22524	Soybean	nucleus	21.88	18.68
KRH35868	Soybean	nucleus	17.17	14.16
KRG90917	Soybean	nucleus	16.34	13.47

Protein Annotations

EntrezGene:100782635	MapMan:15.5.1.2	EMBL:ACUP02008056	InterPro:CCT_domain	ncoils:Coil	EnsemblPlantsGene:GLYMA_13G050300
GO:GO:0000003	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0007275	GO:GO:0008150	GO:GO:0008270	GO:GO:0009416
GO:GO:0009628	GO:GO:0009791	GO:GO:0009908	GO:GO:0009909	UniProt:I1LWY2	InterPro:IPR000315
InterPro:IPR010402	EnsemblPlants:KRH18308	ProteinID:KRH18308	ProteinID:KRH18308.1	PFAM:PF00643	PFAM:PF06203
PFscan:PS50119	PFscan:PS51017	PANTHER:PTHR31319	PANTHER:PTHR31319:SF39	SMART:SM00336	UniParc:UPI000233C195
InterPro:Znf_B-box	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr13:+:14630394..14632571

Molecular Weight (calculated)

40220.7 Da

IEP (calculated)

5.269

GRAVY (calculated)

-0.492

Length

361 amino acids

Sequence
(BLAST)

001: MLKEGTNNVG GSTGTWSHVC DTCRSAPCVL YCHADSAYLC SSCDARVHAA NRVASRHERV WVCEACERAP AAFLCKADAA SLCSSCDADI HSANPLASRH
101: HRVPILPISG SLFGEPEHER VYAFVNEVEA EEEEEEVFDE YDEVEAASWL LPHPMKNDKI DENGGDKGFL FGDEYFDNLV DCNSCGHNNN QFSNVYDQHQ
201: QNYSNTVPQN YAVVPVQVPQ HFQPGLDFDS SKAGFSYDGS LSQSVSVSSM DVGVVLESTI SDISMSHSKS PIGTTDLFPP LPMPSHLTPM DREARVLRYR
301: EKKKTRKFEK KIRYASRKAY AETRPRIKGR FAKRTDVEAE VDQMFSTTLF TEVGGSIFPT F

Best Arabidopsis Sequence Match ( AT3G02380.1 )
(BLAST)

001: MLKEESNESG TWARACDTCR SAACTVYCEA DSAYLCTTCD ARVHAANRVA SRHERVRVCQ SCESAPAAFL CKADAASLCT ACDAEIHSAN PLARRHQRVP
101: ILPLSANSCS SMAPSETDAD NDEDDREVAS WLLPNPGKNI GNQNNGFLFG VEYLDLVDYS SSMDNQFEDN QYTHYQRSFG GDGVVPLQVE ESTSHLQQSQ
201: QNFQLGINYG FSSGAHYNNN SLKDLNHSAS VSSMDISVVP ESTASDITVQ HPRTTKETID QLSGPPTQVV QQLTPMEREA RVLRYREKKK TRKFDKTIRY
301: ASRKAYAEIR PRIKGRFAKR IETEAEAEEI FSTSLMSETG YGIVPSF

Arabidopsis Description

COL2Zinc finger protein CONSTANS-LIKE 2 [Source:UniProtKB/Swiss-Prot;Acc:Q96502]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.