Factsheet for GSMUA_Achr9P22690_001

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

nucleus 5
mitochondrion 1
plastid 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr10P...
GSMUA_Achr11P...
GSMUA_Achr11P...
GSMUA_Achr1P10450_001
GSMUA_Achr1P13690_001
GSMUA_Achr1P13700_001
GSMUA_Achr1P28310_001
GSMUA_Achr3P20130_001
GSMUA_Achr3P28130_001
GSMUA_Achr3P31750_001
GSMUA_Achr4P18680_001
GSMUA_Achr4P20870_001
GSMUA_Achr4P22090_001
GSMUA_Achr5P14740_001
GSMUA_Achr6P03790_001
GSMUA_Achr6P16620_001
GSMUA_Achr7P01890_001
GSMUA_Achr7P08700_001
GSMUA_Achr7P23040_001
GSMUA_Achr8P05740_001
GSMUA_Achr9P13880_001
GSMUA_Achr9P22690_001
GSMUA_AchrUn_...
GSMUA_AchrUn_...
GSMUA_AchrUn_...
GSMUA_AchrUn_...

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G02380.1	GSMUA_Achr1P10450_001	AT3G21150.1	21798944
AT3G02380.1	GSMUA_Achr6P03790_001	AT3G21150.1	21798944
AT3G02380.1	GSMUA_Achr7P08700_001	AT3G21150.1	21798944
AT3G02380.1	GSMUA_Achr9P13880_001	AT3G21150.1	21798944
AT3G02380.1	GSMUA_AchrUn_...	AT3G21150.1	21798944
AT5G15840.1	GSMUA_Achr3P20130_001	AT2G32950.1	18296627
AT5G15840.1	GSMUA_AchrUn_...	AT2G32950.1	18296627
AT5G15840.1	GSMUA_Achr3P20130_001	AT2G32950.1	18388858
AT5G15840.1	GSMUA_AchrUn_...	AT2G32950.1	18388858
AT5G15840.1	GSMUA_Achr7P23040_001	AT3G24650.1	10743655
AT5G15840.1	GSMUA_AchrUn_...	AT3G24650.1	10743655
AT5G15840.1	GSMUA_Achr10P...	AT3G48590.1	17138697
AT5G15840.1	GSMUA_Achr6P16620_001	AT3G48590.1	17138697
AT5G15840.1	GSMUA_Achr4P20870_001	AT5G65683.1	21798944
AT5G15840.1	GSMUA_Achr4P22090_001	AT5G65683.1	21798944
AT5G15840.1	GSMUA_Achr5P14740_001	AT5G65683.1	21798944
AT5G15840.1	GSMUA_Achr7P01890_001	AT5G65683.1	21798944
AT5G15850.1	GSMUA_Achr1P13690_001	AT1G53090.1	16854975
AT5G15850.1	GSMUA_Achr1P13700_001	AT1G53090.1	16854975
AT5G15850.1	GSMUA_Achr3P31750_001	AT1G53090.1	16854975
AT5G15850.1	GSMUA_Achr1P13690_001	AT1G53090.1	18812498
AT5G15850.1	GSMUA_Achr1P13700_001	AT1G53090.1	18812498
AT5G15850.1	GSMUA_Achr3P31750_001	AT1G53090.1	18812498
AT5G15850.1	GSMUA_Achr3P20130_001	AT2G32950.1	18812498
AT5G15850.1	GSMUA_AchrUn_...	AT2G32950.1	18812498
AT5G15850.1	GSMUA_Achr11P...	AT4G11110.1	16854975
AT5G15850.1	GSMUA_Achr1P28310_001	AT4G11110.1	16854975
AT5G15850.1	GSMUA_Achr8P05740_001	AT4G11110.1	16854975
AT5G15850.1	GSMUA_Achr11P...	AT5G14250.1	18812498
AT5G15850.1	GSMUA_AchrUn_...	AT5G14250.1	18812498
AT5G15850.1	GSMUA_Achr3P28130_001	AT5G15850.1	18812498
AT5G15850.1	GSMUA_Achr4P18680_001	AT5G15850.1	18812498
AT5G15850.1	GSMUA_Achr9P22690_001	AT5G15850.1	18812498

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr3P28130_001	Banana	nucleus	64.95	67.5
GSMUA_Achr4P18680_001	Banana	nucleus	16.49	54.55
CDY69474	Canola	nucleus, plastid	16.49	50.0
KRH01455	Soybean	nucleus	45.36	37.5
VIT_14s0083g00640.t01	Wine grape	nucleus	50.17	37.34
Bra001043.1-P	Field mustard	nucleus	29.21	37.28
KRH45169	Soybean	nucleus	43.64	36.49
Solyc02g089540.2.1	Tomato	nucleus	48.8	36.32
GSMUA_Achr2P04960_001	Banana	nucleus	33.33	36.06
PGSC0003DMT400026068	Potato	nucleus	48.8	35.06
KRG93763	Soybean	nucleus	43.99	34.97
KRH18308	Soybean	nucleus	43.3	34.9
Bra021464.1-P	Field mustard	nucleus	38.49	34.89
AT3G02380.1	Thale cress	nucleus	41.58	34.87
PGSC0003DMT400026065	Potato	nucleus	49.48	34.87
GSMUA_Achr7P16370_001	Banana	nucleus	34.36	34.25
Solyc02g089520.1.1	Tomato	nucleus	48.11	34.23
GSMUA_Achr1P23420_001	Banana	nucleus	38.49	33.43
GSMUA_Achr10P...	Banana	nucleus	36.43	33.23
AT5G15850.1	Thale cress	nucleus	40.21	32.96
Bra008668.1-P	Field mustard	nucleus	37.8	32.64
GSMUA_Achr9P19630_001	Banana	nucleus	37.11	32.43
GSMUA_AchrUn_...	Banana	nucleus	35.05	31.97
Bra023541.1-P	Field mustard	nucleus	34.36	31.75
AT5G15840.1	Thale cress	nucleus	38.14	29.76
Bra008669.1-P	Field mustard	nucleus	36.08	28.69
GSMUA_Achr11P...	Banana	nucleus	34.02	28.45
Solyc02g089500.2.1	Tomato	nucleus	12.03	24.65
GSMUA_Achr5P22460_001	Banana	nucleus	20.96	15.6
GSMUA_Achr3P04260_001	Banana	nucleus	21.65	15.0
GSMUA_Achr10P...	Banana	nucleus	19.93	14.46
GSMUA_Achr9P12860_001	Banana	nucleus	20.27	14.15
GSMUA_Achr5P04270_001	Banana	nucleus	19.24	13.27
GSMUA_Achr7P20150_001	Banana	nucleus	18.56	13.11
GSMUA_Achr10P...	Banana	nucleus	20.27	12.88
GSMUA_Achr6P06130_001	Banana	nucleus	18.56	12.13
HORVU0Hr1G022380.1	Barley	cytosol	11.68	11.97
GSMUA_Achr3P08880_001	Banana	nucleus	16.49	11.76
GSMUA_Achr6P13590_001	Banana	cytosol, mitochondrion, nucleus	3.44	11.24
GSMUA_Achr11P...	Banana	nucleus	17.87	10.04

Protein Annotations

MapMan:35.1	InterPro:CCT_domain	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0008270	EnsemblPlantsGene:GSMUA_Achr9G22690_001	EnsemblPlants:GSMUA_Achr9P22690_001
EnsemblPlants:GSMUA_Achr9T22690_001	InterPro:IPR000315	InterPro:IPR010402	UniProt:M0U2M8	PFAM:PF00643	PFAM:PF06203
PFscan:PS50119	PFscan:PS51017	PANTHER:PTHR31319	PANTHER:PTHR31319:SF39	SMART:SM00336	UniParc:UPI000296BB43
InterPro:Znf_B-box	SEG:seg	:	:	:	:

Description

Putative Zinc finger protein CONSTANS-LIKE 2 [Source:GMGC_GENE;Acc:GSMUA_Achr9G22690_001]

Coordinates

chr9:+:27798730..27799797

Molecular Weight (calculated)

31870.4 Da

IEP (calculated)

5.635

GRAVY (calculated)

-0.412

Length

291 amino acids

Sequence
(BLAST)

001: MKVEGSPSCE SCRSAPSTVY CRADAAALCA TCDASIHSAN LLARRHQRVP VLLALAGGGL VVRPSLTLPY HIGVPVGLDE SEREDDEEEE AASWLLLDPV
101: KGNGQGAAAL PPFAEVDEFL DLVGYNAGEN QGSECCNGPM QQQQLQYSYE TSEESECLVP NELHQLQQSL QMEHGASNGL NYSVSLSSVD ASVVPDTSNT
201: SHIRASKGTI HLFSPRFNPM DREARVMRYR EKRKARKFEK TVRYASRKAY AETRPRIKGR FAKKSDAELE VDHMFSVAVL ADSSFGVVPS F

Best Arabidopsis Sequence Match ( AT3G02380.1 )
(BLAST)

001: MLKEESNESG TWARACDTCR SAACTVYCEA DSAYLCTTCD ARVHAANRVA SRHERVRVCQ SCESAPAAFL CKADAASLCT ACDAEIHSAN PLARRHQRVP
101: ILPLSANSCS SMAPSETDAD NDEDDREVAS WLLPNPGKNI GNQNNGFLFG VEYLDLVDYS SSMDNQFEDN QYTHYQRSFG GDGVVPLQVE ESTSHLQQSQ
201: QNFQLGINYG FSSGAHYNNN SLKDLNHSAS VSSMDISVVP ESTASDITVQ HPRTTKETID QLSGPPTQVV QQLTPMEREA RVLRYREKKK TRKFDKTIRY
301: ASRKAYAEIR PRIKGRFAKR IETEAEAEEI FSTSLMSETG YGIVPSF

Arabidopsis Description

COL2Zinc finger protein CONSTANS-LIKE 2 [Source:UniProtKB/Swiss-Prot;Acc:Q96502]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.