Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH01455 | Soybean | nucleus | 89.08 | 88.07 |
| VIT_14s0083g00640.t01 | Wine grape | nucleus | 67.24 | 59.85 |
| KRH18308 | Soybean | nucleus | 60.92 | 58.73 |
| KRG93763 | Soybean | nucleus | 60.06 | 57.1 |
| AT3G02380.1 | Thale cress | nucleus | 56.9 | 57.06 |
| PGSC0003DMT400026065 | Potato | nucleus | 65.23 | 54.96 |
| PGSC0003DMT400026068 | Potato | nucleus | 62.36 | 53.58 |
| Bra021464.1-P | Field mustard | nucleus | 48.56 | 52.65 |
| CDY71884 | Canola | nucleus | 44.25 | 52.2 |
| CDY71818 | Canola | nucleus | 43.97 | 51.69 |
| Bra023541.1-P | Field mustard | nucleus | 46.26 | 51.11 |
| CDX85529 | Canola | nucleus | 45.98 | 50.47 |
| CDX90969 | Canola | nucleus | 46.55 | 50.47 |
| AT5G15850.1 | Thale cress | nucleus | 51.44 | 50.42 |
| Solyc02g089500.2.1 | Tomato | nucleus | 20.4 | 50.0 |
| GSMUA_Achr4P18680_001 | Banana | nucleus | 12.64 | 50.0 |
| CDX69493 | Canola | nucleus | 48.28 | 49.85 |
| Bra008668.1-P | Field mustard | nucleus | 47.7 | 49.26 |
| CDY26470 | Canola | nucleus | 46.84 | 48.95 |
| GSMUA_Achr3P28130_001 | Banana | nucleus | 38.51 | 47.86 |
| AT5G15840.1 | Thale cress | nucleus | 50.0 | 46.65 |
| KRH61628 | Soybean | nucleus, plastid | 40.8 | 45.95 |
| KRH52295 | Soybean | nucleus, plastid | 40.8 | 45.81 |
| Bra008669.1-P | Field mustard | nucleus | 46.84 | 44.54 |
| CDY26469 | Canola | nucleus | 46.84 | 44.54 |
| CDX69494 | Canola | nucleus | 46.84 | 44.29 |
| GSMUA_Achr9P22690_001 | Banana | nucleus, plastid | 36.49 | 43.64 |
| KRH02915 | Soybean | nucleus | 43.1 | 40.11 |
| KRH18980 | Soybean | nucleus | 41.67 | 39.73 |
| HORVU0Hr1G022380.1 | Barley | cytosol | 19.83 | 24.3 |
| KRH16989 | Soybean | nucleus | 25.57 | 21.65 |
| KRH72628 | Soybean | nucleus | 25.0 | 21.48 |
| KRG96381 | Soybean | nucleus | 21.55 | 21.37 |
| KRH68113 | Soybean | nucleus | 21.26 | 21.2 |
| KRH31920 | Soybean | nucleus | 20.69 | 20.69 |
| KRH71535 | Soybean | nucleus | 19.83 | 20.29 |
| KRH17709 | Soybean | nucleus | 23.56 | 20.05 |
| KRG89998 | Soybean | nucleus | 23.28 | 19.8 |
| KRH06865 | Soybean | nucleus | 20.4 | 18.64 |
| KRG94656 | Soybean | nucleus | 19.54 | 17.66 |
| KRH26833 | Soybean | nucleus | 21.26 | 17.49 |
| KRH22524 | Soybean | nucleus | 20.69 | 17.02 |
| KRG90917 | Soybean | nucleus | 13.79 | 10.96 |
| KRH35868 | Soybean | nucleus | 13.51 | 10.73 |
Protein Annotations
| EntrezGene:100301885 | MapMan:15.5.1.2 | ProteinID:ACJ65311.1 | EMBL:ACUP02005003 | UniProt:B9MSS5 | InterPro:CCT_domain |
| EMBL:DQ371243 | EnsemblPlantsGene:GLYMA_08G255200 | GO:GO:0000003 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0007275 | GO:GO:0008150 |
| GO:GO:0008270 | GO:GO:0009416 | GO:GO:0009628 | GO:GO:0009791 | GO:GO:0009908 | GO:GO:0009909 |
| InterPro:IPR000315 | InterPro:IPR010402 | EnsemblPlants:KRH45169 | ProteinID:KRH45169 | ProteinID:KRH45169.1 | PFAM:PF00643 |
| PFAM:PF06203 | PFscan:PS50119 | PFscan:PS51017 | PANTHER:PTHR31319 | PANTHER:PTHR31319:SF39 | SMART:SM00336 |
| UniParc:UPI000191EB9C | InterPro:Znf_B-box | SEG:seg | : | : | : |
Description
hypothetical protein
Coordinates
chr8:-:22598596..22601308
Molecular Weight (calculated)
38475.7 Da
IEP (calculated)
6.317
GRAVY (calculated)
-0.434
Length
348 amino acids
Sequence
(BLAST)
(BLAST)
001: MLDGEATMGT WARMCDTCRS APSSVFCRAH TAFLCATCDA RLHASLTWHE RVWVCEACER APAAFLCKAD AASLCASCDA DIHAANPLAS RHHRVPILPI
101: AAAPGNNDND NVDDADLDDD DETASWLLLN PVKSASVPNN NNTNNGFSYN GEVDEYLDLV DDCDNHHFAS VATTTDHYSH QHQHFGVVSH KSYAGDSVVP
201: VQHHQHFQLG LEFDNSKAAF SYNASVNQSV SVSSMDIGVV PESPMRDVSI GHTRTPKGTI DLFSGPPIQV PSHFSPMDRE ARVLRYREKK KTRKFEKTIR
301: YASRKAYAET RPRIKGRFAK RTDVEAEVDQ MFSTTLITEV GYGIVPSF
101: AAAPGNNDND NVDDADLDDD DETASWLLLN PVKSASVPNN NNTNNGFSYN GEVDEYLDLV DDCDNHHFAS VATTTDHYSH QHQHFGVVSH KSYAGDSVVP
201: VQHHQHFQLG LEFDNSKAAF SYNASVNQSV SVSSMDIGVV PESPMRDVSI GHTRTPKGTI DLFSGPPIQV PSHFSPMDRE ARVLRYREKK KTRKFEKTIR
301: YASRKAYAET RPRIKGRFAK RTDVEAEVDQ MFSTTLITEV GYGIVPSF
001: MLKEESNESG TWARACDTCR SAACTVYCEA DSAYLCTTCD ARVHAANRVA SRHERVRVCQ SCESAPAAFL CKADAASLCT ACDAEIHSAN PLARRHQRVP
101: ILPLSANSCS SMAPSETDAD NDEDDREVAS WLLPNPGKNI GNQNNGFLFG VEYLDLVDYS SSMDNQFEDN QYTHYQRSFG GDGVVPLQVE ESTSHLQQSQ
201: QNFQLGINYG FSSGAHYNNN SLKDLNHSAS VSSMDISVVP ESTASDITVQ HPRTTKETID QLSGPPTQVV QQLTPMEREA RVLRYREKKK TRKFDKTIRY
301: ASRKAYAEIR PRIKGRFAKR IETEAEAEEI FSTSLMSETG YGIVPSF
101: ILPLSANSCS SMAPSETDAD NDEDDREVAS WLLPNPGKNI GNQNNGFLFG VEYLDLVDYS SSMDNQFEDN QYTHYQRSFG GDGVVPLQVE ESTSHLQQSQ
201: QNFQLGINYG FSSGAHYNNN SLKDLNHSAS VSSMDISVVP ESTASDITVQ HPRTTKETID QLSGPPTQVV QQLTPMEREA RVLRYREKKK TRKFDKTIRY
301: ASRKAYAEIR PRIKGRFAKR IETEAEAEEI FSTSLMSETG YGIVPSF
Arabidopsis Description
COL2Zinc finger protein CONSTANS-LIKE 2 [Source:UniProtKB/Swiss-Prot;Acc:Q96502]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.