CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX69493
CDX70553
CDX78568
CDX78656
CDX85529
CDX85608
CDX86817
CDX90969
CDX91076
CDY12145
CDY25880
CDY26433
CDY26470
CDY40851
CDY50512
CDY52540

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G15850.1	CDY25880	AT1G53090.1	16854975
AT5G15850.1	CDY50512	AT1G53090.1	16854975
AT5G15850.1	CDY25880	AT1G53090.1	18812498
AT5G15850.1	CDY50512	AT1G53090.1	18812498
AT5G15850.1	CDY12145	AT2G32950.1	18812498
AT5G15850.1	CDY52540	AT2G32950.1	18812498
AT5G15850.1	CDX86817	AT4G11110.1	16854975
AT5G15850.1	CDY40851	AT4G11110.1	16854975
AT5G15850.1	CDX70553	AT5G14250.1	18812498
AT5G15850.1	CDX78568	AT5G14250.1	18812498
AT5G15850.1	CDX78656	AT5G14250.1	18812498
AT5G15850.1	CDX85608	AT5G14250.1	18812498
AT5G15850.1	CDX91076	AT5G14250.1	18812498
AT5G15850.1	CDY26433	AT5G14250.1	18812498
AT5G15850.1	CDX69493	AT5G15850.1	18812498
AT5G15850.1	CDX85529	AT5G15850.1	18812498
AT5G15850.1	CDX90969	AT5G15850.1	18812498
AT5G15850.1	CDY26470	AT5G15850.1	18812498

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX69493	Canola	nucleus	93.09	91.99
CDY69474	Canola	nucleus, plastid	24.62	85.42
CDX85529	Canola	nucleus	74.47	78.23
CDX90969	Canola	nucleus	71.47	74.14
AT5G15850.1	Thale cress	nucleus	73.87	69.3
CDY71818	Canola	nucleus	51.65	58.11
CDY71884	Canola	nucleus	51.35	57.97
Solyc02g089500.2.1	Tomato	nucleus	21.92	51.41
CDX91989	Canola	nucleus	33.33	48.68
VIT_14s0083g00640.t01	Wine grape	nucleus	57.06	48.59
CDX74261	Canola	nucleus	33.03	48.25
KRH18308	Soybean	nucleus	51.65	47.65
CDY45597	Canola	nucleus	40.84	47.06
KRH45169	Soybean	nucleus	48.95	46.84
KRG93763	Soybean	nucleus	51.35	46.72
CDY36171	Canola	nucleus	40.24	46.21
CDX69494	Canola	nucleus	51.05	46.2
CDY26469	Canola	nucleus	50.45	45.9
PGSC0003DMT400026065	Potato	nucleus	56.76	45.76
KRH01455	Soybean	nucleus	47.45	44.89
PGSC0003DMT400026068	Potato	nucleus	52.55	43.21
CDY19821	Canola	nucleus	37.24	42.18
CDY02749	Canola	nucleus, plastid	32.73	42.08
CDX88145	Canola	nucleus	36.64	41.5
CDX80476	Canola	nucleus, plastid	38.14	38.6
CDX87105	Canola	nucleus, plastid	36.34	38.17
CDY58843	Canola	nucleus, plastid	36.94	35.96
CDY25892	Canola	nucleus	34.53	34.53
CDY49730	Canola	nucleus	19.82	30.28
CDY53026	Canola	nucleus	23.42	23.35
CDX80141	Canola	nucleus	23.12	23.19
CDY07979	Canola	nucleus	24.32	23.01
CDY15696	Canola	nucleus	19.82	22.84
CDY05691	Canola	nucleus	23.12	22.19
CDY48743	Canola	nucleus	23.12	22.0
CDY35952	Canola	nucleus	23.72	21.41
CDY28029	Canola	nucleus	23.72	21.24
CDY22125	Canola	nucleus	22.82	20.77
CDX74034	Canola	nucleus	24.02	20.51
CDX86318	Canola	nucleus	21.92	20.39
CDX85321	Canola	nucleus	21.92	20.33
HORVU0Hr1G022380.1	Barley	cytosol	16.22	19.01
CDY66639	Canola	nucleus	22.22	18.36
CDY68819	Canola	nucleus	21.02	18.09
CDY30385	Canola	nucleus	21.02	18.09
CDY64255	Canola	nucleus	19.82	17.79
CDY55657	Canola	nucleus	20.42	17.62
CDY11755	Canola	nucleus	20.72	17.56
CDX90119	Canola	nucleus	21.32	16.95
CDY04213	Canola	nucleus	16.22	16.07
CDY48428	Canola	nucleus	9.61	11.85
CDY07393	Canola	nucleus	17.42	10.82

Protein Annotations

MapMan:15.5.1.2	GO:A0A078GIZ6	UniProt:A0A078GIZ6	InterPro:CCT_domain	EnsemblPlants:CDY26470	ProteinID:CDY26470
ProteinID:CDY26470.1	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0008270	EnsemblPlantsGene:GSBRNA2T00035274001	InterPro:IPR000315	InterPro:IPR010402
PFAM:PF00643	PFAM:PF06203	PFscan:PS50119	PFscan:PS51017	PANTHER:PTHR31319	PANTHER:PTHR31319:SF39
SMART:SM00336	UniParc:UPI0004EF27BE	InterPro:Znf_B-box	SEG:seg	:	:

Description

BnaC09g41980DBnaC09g41980D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GIZ6]

Coordinates

chrLK032190:-:329161..330162

Molecular Weight (calculated)

37534.8 Da

IEP (calculated)

6.969

GRAVY (calculated)

-0.660

Length

333 amino acids

Sequence
(BLAST)

001: MLKQESNWAQ TCDTCRSAAC TVYCRADSAY LCTNCDAQVH AANRLASRHE RVRVCQSCER APAAFFCKAD AASLCTACDS QIHSANPLAR RHQRVPILPI
101: SGSMVTNHSS ETTETEDIVV VGQEEEDEAE AASWLLHSSV KNSGDNNNNN NNSENRFSVG DEYVDLVDYN KYQQDYNVPQ RSYVADGVVP LQVGVLKSHM
201: HHEEHNFQFG FTNVSSEASP IHMVSLVPES TLSETTVSHP RSPKVATEEL HDAPVQMLSP VERKARVMRY REKKKTRKFE KRIRYASRKE YAEKRPRIKG
301: RFAKRNEVDA EEADKAFSSM VMFDTGYGIV PSF

Best Arabidopsis Sequence Match ( AT5G15850.1 )
(BLAST)

001: MLKVESNWAQ ACDTCRSAAC TVYCRADSAY LCSSCDAQVH AANRLASRHE RVRVCQSCER APAAFFCKAD AASLCTTCDS EIHSANPLAR RHQRVPILPI
101: SEYSYSSTAT NHSCETTVTD PENRLVLGQE EEDEDEAEAA SWLLPNSGKN SGNNNGFSIG DEFLNLVDYS SSDKQFTDQS NQYQLDCNVP QRSYGEDGVV
201: PLQIEVSKGM YQEQQNFQLS INCGSWGALR SSNGSLSHMV NVSSMDLGVV PESTTSDATV SNPRSPKAVT DQPPYPPAQM LSPRDREARV LRYREKKKMR
301: KFEKTIRYAS RKAYAEKRPR IKGRFAKKKD VDEEANQAFS TMITFDTGYG IVPSF

Arabidopsis Description

COL1Zinc finger protein CONSTANS-LIKE 1 [Source:UniProtKB/Swiss-Prot;Acc:O50055]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.