CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX80136
CDX82214
CDX83320
CDX84419
CDY05857
CDY08084
CDY19582
CDY32408
CDY50075
CDY53021
CDY66668

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G28050.1	CDX80136	AT2G47810.1	17138697
AT1G28050.1	CDX83320	AT2G47810.1	17138697
AT1G28050.1	CDY53021	AT2G47810.1	17138697
AT1G28050.1	CDX82214	AT3G21150.1	21798944
AT1G28050.1	CDY19582	AT3G21150.1	21798944
AT1G28050.1	CDY32408	AT3G21150.1	21798944
AT1G28050.1	CDY50075	AT3G21150.1	21798944
AT1G28050.1	CDX84419	AT5G63470.1	17138697
AT1G28050.1	CDY05857	AT5G63470.1	17138697
AT1G28050.1	CDY08084	AT5G63470.1	17138697
AT1G28050.1	CDY66668	AT5G63470.1	17138697

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY68819	Canola	nucleus	99.48	99.48
CDY48428	Canola	nucleus	64.6	92.59
Bra041077.1-P	Field mustard	nucleus	96.38	91.42
CDY15696	Canola	nucleus	55.56	74.39
CDY11755	Canola	nucleus	75.45	74.3
CDY66639	Canola	nucleus	73.64	70.72
CDX90119	Canola	nucleus	76.49	70.64
AT1G28050.1	Thale cress	nucleus	74.68	66.74
VIT_01s0146g00360.t01	Wine grape	nucleus	52.71	43.5
Solyc05g024010.2.1	Tomato	nucleus	48.58	41.59
PGSC0003DMT400065377	Potato	nucleus	48.06	41.06
VIT_14s0068g01380.t01	Wine grape	nucleus	43.41	37.42
CDY53026	Canola	nucleus	29.46	34.13
CDX80141	Canola	nucleus	29.2	34.04
KRH06865	Soybean	nucleus	32.56	33.07
KRG94656	Soybean	nucleus	32.82	32.99
GSMUA_Achr10P...	Banana	nucleus	38.5	32.53
GSMUA_Achr6P06130_001	Banana	nucleus	35.14	30.56
EES14176	Sorghum	nucleus	38.24	30.2
Os09t0509700-01	Rice	nucleus	33.33	29.93
TraesCS7D01G264300.1	Wheat	nucleus	36.95	29.24
TraesCS7A01G263500.1	Wheat	nucleus	36.95	29.18
Zm00001d031662_P001	Maize	nucleus	36.69	29.04
TraesCS7B01G161500.1	Wheat	nucleus	36.43	28.89
GSMUA_Achr11P...	Banana	nucleus	38.5	28.76
CDY48743	Canola	nucleus	24.55	27.14
CDY45597	Canola	nucleus	20.16	26.99
CDY36171	Canola	nucleus	20.16	26.9
CDX88145	Canola	nucleus	20.41	26.87
CDY19821	Canola	nucleus	20.41	26.87
CDY05691	Canola	nucleus	24.03	26.8
CDY07979	Canola	nucleus	24.29	26.7
CDY22125	Canola	nucleus	25.06	26.5
CDY35952	Canola	nucleus	25.06	26.29
CDX86318	Canola	nucleus	24.29	26.26
CDX85321	Canola	nucleus	24.29	26.18
CDY28029	Canola	nucleus	24.81	25.81
CDY02749	Canola	nucleus, plastid	17.05	25.48
CDY69474	Canola	nucleus, plastid	6.2	25.0
CDX87105	Canola	nucleus, plastid	20.16	24.61
CDX80476	Canola	nucleus, plastid	20.67	24.32
CDX74034	Canola	nucleus	23.77	23.59
CDY64255	Canola	nucleus	21.71	22.64
CDX85529	Canola	nucleus	18.09	22.08
HORVU0Hr1G021050.5	Barley	cytosol	24.03	21.99
CDX90969	Canola	nucleus	18.09	21.81
CDY55657	Canola	nucleus	21.45	21.5
CDX69493	Canola	nucleus	18.35	21.07
CDY25892	Canola	nucleus	18.09	21.02
CDY26470	Canola	nucleus	18.09	21.02
CDY04213	Canola	nucleus	18.09	20.83
CDY71884	Canola	nucleus	15.76	20.68
CDY71818	Canola	nucleus	15.5	20.27
CDY26469	Canola	nucleus	19.12	20.22
CDY58843	Canola	nucleus, plastid	17.83	20.18
CDX69494	Canola	nucleus	19.12	20.11
CDY49730	Canola	nucleus	9.3	16.51
CDX74261	Canola	nucleus	9.56	16.23
CDX91989	Canola	nucleus	9.3	15.79
CDY07393	Canola	nucleus	19.12	13.81

Protein Annotations

MapMan:15.5.1.2	GO:A0A078GV45	UniProt:A0A078GV45	InterPro:CCT_domain	EnsemblPlants:CDY30385	ProteinID:CDY30385
ProteinID:CDY30385.1	ncoils:Coil	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0008270	GO:GO:0046872	EnsemblPlantsGene:GSBRNA2T00045079001
InterPro:IPR000315	InterPro:IPR010402	PFAM:PF06203	PFscan:PS50119	PFscan:PS51017	PANTHER:PTHR31717
PANTHER:PTHR31717:SF20	SMART:SM00336	UniParc:UPI0004EEA143	InterPro:Znf_B-box	SEG:seg	:

Description

BnaA04g24860DBnaA04g24860D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GV45]

Coordinates

chrLK032253:+:74111..75632

Molecular Weight (calculated)

42793.6 Da

IEP (calculated)

7.647

GRAVY (calculated)

-0.514

Length

387 amino acids

Sequence
(BLAST)

001: MSSSERVPCD FCGERTAVLF CRADAAKLCL SCDHHVHKAN LLSRKHVRSL ICDSCGNEPV SVRCFTDDLV LCQECDWDVH GSCSHVRSAV EGFSGCPSAL
101: ELAALLGVDL EGRKEEKEVP LMMTMESFGM ELDSWGFGSN VLQELIVPVT NDTTTFKKRS SSCGRYKQVL CKQLEELLKG EDNDGDGGGE AKEGIMVPFI
201: HQPPTTSFSS LISGCQSTQI WDFNLGQSRE PEDTIRTEAA ACVTKDAASF KVNSIVKLLN DACSTKAKRV KEIFQDGYKR STSGQVPATS ENNNNLPITF
301: GSNTSNELCF TENTGGTSCN KATRVVATKA DLEQLAQNRG NAMQRYKEKR KNRRYDKTIR YESRKARADT RLRVKGRFVK ATEAPYP

Best Arabidopsis Sequence Match ( AT1G28050.1 )
(BLAST)

001: MSSSERVPCD FCGERTAVLF CRADTAKLCL PCDQQVHTAN LLSRKHVRSQ ICDNCGNEPV SVRCFTDNLI LCQECDWDVH GSCSVSDAHV RSAVEGFSGC
101: PSALELAALW GLDLEQGRKD EENQVPMMAM MMDNFGMQLD SWVLGSNELI VPSDTTFKKR GSCGSSCGRY KQVLCKQLEE LLKSGVVGGD GDDGDRDRDC
201: DREGACDGDG DGEAGEGLMV PEMSERLKWS RDVEEINGGG GGGVNQQWNA TTTNPSGGQS SQIWDFNLGQ SRGPEDTSRV EAAYVGKGAA SSFTINNFVD
301: HMNETCSTNV KGVKEIKKDD YKRSTSGQVQ PTKSESNNRP ITFGSEKGSN SSSDLHFTEH IAGTSCKTTR LVATKADLER LAQNRGDAMQ RYKEKRKTRR
401: YDKTIRYESR KARADTRLRV RGRFVKASEA PYP

Arabidopsis Description

COL15Zinc finger protein CONSTANS-LIKE 15 [Source:UniProtKB/Swiss-Prot;Acc:Q9C7E8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.