Factsheet for PGSC0003DMT400065377

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400023896
PGSC0003DMT400029608
PGSC0003DMT400039254
PGSC0003DMT400039470
PGSC0003DMT400068177
PGSC0003DMT400069203

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G28050.1	PGSC0003DMT400029608	AT2G47810.1	17138697
AT1G28050.1	PGSC0003DMT400068177	AT3G21150.1	21798944
AT1G28050.1	PGSC0003DMT400039470	AT3G48590.1	17138697
AT1G28050.1	PGSC0003DMT400039254	AT5G50470.1	17138697
AT1G28050.1	PGSC0003DMT400039254	AT5G50480.1	17138697
AT1G28050.1	PGSC0003DMT400039254	AT5G50490.1	17138697
AT2G33500.1	PGSC0003DMT400023896	AT1G71230.1	21798944
AT2G33500.1	PGSC0003DMT400069203	AT1G71230.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc05g024010.2.1	Tomato	nucleus	94.48	94.69
CDY15696	Canola	nucleus	34.0	53.29
Bra030070.1-P	Field mustard	nucleus	34.88	51.3
CDY11755	Canola	nucleus	43.27	49.87
CDY30385	Canola	nucleus	41.06	48.06
CDY68819	Canola	nucleus	41.06	48.06
Bra010908.1-P	Field mustard	nucleus	43.71	47.37
CDY66639	Canola	nucleus	41.94	47.15
CDX90119	Canola	nucleus	43.27	46.78
Bra041077.1-P	Field mustard	nucleus	41.72	46.32
VIT_14s0068g01380.t01	Wine grape	nucleus	44.37	44.77
AT1G28050.1	Thale cress	nucleus	42.6	44.57
AT2G33500.1	Thale cress	nucleus	39.51	44.53
CDY48428	Canola	nucleus	24.28	40.74
KRG94656	Soybean	nucleus	32.67	38.44
KRH06865	Soybean	nucleus	32.23	38.32
GSMUA_Achr10P...	Banana	nucleus	34.88	34.5
EES14176	Sorghum	nucleus	34.88	32.24
PGSC0003DMT400029591	Potato	nucleus	26.27	31.4
GSMUA_Achr6P06130_001	Banana	nucleus	30.68	31.24
GSMUA_Achr11P...	Banana	nucleus	35.32	30.89
TraesCS7B01G161500.1	Wheat	nucleus	32.89	30.53
TraesCS7D01G264300.1	Wheat	nucleus	32.89	30.47
Zm00001d031662_P001	Maize	nucleus	32.67	30.27
TraesCS7A01G263500.1	Wheat	nucleus	32.45	30.0
Os09t0509700-01	Rice	nucleus	28.48	29.93
PGSC0003DMT400013624	Potato	nucleus	22.52	24.7
HORVU0Hr1G021050.5	Barley	cytosol	22.74	24.35
PGSC0003DMT400074143	Potato	nucleus	21.41	23.77
PGSC0003DMT400044878	Potato	nucleus	21.41	23.6
PGSC0003DMT400067657	Potato	nucleus	17.0	22.19
PGSC0003DMT400075520	Potato	nucleus	17.22	21.85
PGSC0003DMT400003198	Potato	nucleus	20.09	21.56
PGSC0003DMT400070680	Potato	nucleus	16.78	19.74
PGSC0003DMT400015373	Potato	endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, vacuole	20.75	19.22
PGSC0003DMT400026068	Potato	nucleus	17.0	19.01
PGSC0003DMT400026065	Potato	nucleus	17.0	18.64
PGSC0003DMT400068637	Potato	nucleus	9.49	16.23
PGSC0003DMT400016342	Potato	nucleus	9.05	15.53
PGSC0003DMT400092769	Potato	nucleus	8.39	14.67

Protein Annotations

EntrezGene:102603812	MapMan:15.5.1.2	InterPro:CCT_domain	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0008270	GO:GO:0046872
InterPro:IPR000315	InterPro:IPR010402	EMBL:KX576516	UniProt:M1CDV4	PFAM:PF00643	PFAM:PF06203
EnsemblPlantsGene:PGSC0003DMG400025414	PGSC:PGSC0003DMG400025414	EnsemblPlants:PGSC0003DMT400065377	PFscan:PS50119	PFscan:PS51017	PANTHER:PTHR31717
PANTHER:PTHR31717:SF20	SMART:SM00336	UniParc:UPI000294E6D7	RefSeq:XP_015158845.1	InterPro:Znf_B-box	:

Description

Zinc finger protein CONSTANS-LIKE 15 [Source:PGSC_GENE;Acc:PGSC0003DMG400025414]

Coordinates

chr5:-:16834679..16838305

Molecular Weight (calculated)

49921.7 Da

IEP (calculated)

6.500

GRAVY (calculated)

-0.600

Length

453 amino acids

Sequence
(BLAST)

001: MSPGESRPCD FCNQQIAVLY CRADTAKLCL FCDQLVHSAN ALSKKHLRSQ ICDNCGSEPV SIRCDTDKLV LCQECDWDAH GSCAVSGAHD RSPVEGFSGC
101: PSASDLASAW GLDIDSKKLH QQHTVLEFPS WMSKDAPPPS SVLLQDLMVP SANNSAIYST KQTPTCGKQK QVIFKQLIEL FKRDLADGVG AGAEDLVPKI
201: PNATSDWQGN VNMLVMDGVN QKLEQQQPQN VPFTSSIMPH NPIDSDQMVE RNILWRGNSF DQNTQIWDFN LGQLRSHEQS SSLEADYSES DMAYMMKSYG
301: ELIKGTSLAT SKGLGLSGIN CSLAHDDMTA FSNDSNNQAA SQGPATSESN NLPRIKTSSD SGYVKTKCCG VSTDMNFMDQ SIVVGGDNTG EETLKADMEL
401: LAKNRGNAMQ RYKEKKKIRR YDKHIRYESR KARADTRKRV KGRFVKANES PDG

Best Arabidopsis Sequence Match ( AT2G33500.2 )
(BLAST)

001: MGTSTTESVV ACEFCGERTA VLFCRADTAK LCLPCDQHVH SANLLSRKHV RSQICDNCSK EPVSVRCFTD NLVLCQECDW DVHGSCSSSA THERSAVEGF
101: SGCPSVLELA AVWGIDLKGK KKEDDEDELT KNFGMGLDSW GSGSNIVQEL IVPYDVSCKK QSFSFGRSKQ VVFEQLELLK RGFVEGEGEI MVPEGINGGG
201: SISQPSPTTS FTSLLMSQSL CGNGMQWNAT NHSTGQNTQI WDFNLGQSRN PDEPSPVETK GSTFTFNNVT HLKNDTRTTN MNAFKESYQE DSVHSTSTKG
301: QETSKSNNIP AAIHSHKSSN DSCGLHCTEH IAITSNRATR LVAVTNADLE QMAQNRDNAM QRYKEKKKTR RYDKTIRYET RKARAETRLR VKGRFVKATD
401: P

Arabidopsis Description

COL14Zinc finger protein CONSTANS-LIKE 14 [Source:UniProtKB/Swiss-Prot;Acc:O22800]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.