Factsheet for PGSC0003DMT400015373

Subcellular Localization

min:

: max

Winner_takes_all: extracellular, endoplasmic reticulum, vacuole, plasma membrane, golgi, nucleus

Predictor Summary:

nucleus 4
cytosol 1
extracellular 3
endoplasmic reticulum 3
vacuole 3
plasma membrane 3
golgi 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus, secretory
Any Predictor:	cytosol, nucleus, secretory
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc04g007470.2.1	Tomato	endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, vacuole	93.25	96.0
VIT_01s0011g04240.t01	Wine grape	nucleus	36.61	50.14
CDY04213	Canola	nucleus	28.43	41.37
KRH35868	Soybean	nucleus	33.95	37.9
KRG90917	Soybean	nucleus	33.74	37.67
AT1G68190.2	Thale cress	extracellular, golgi, vacuole	27.2	34.55
CDY07393	Canola	nucleus	30.47	27.8
PGSC0003DMT400013624	Potato	nucleus	23.31	27.6
PGSC0003DMT400044878	Potato	nucleus	22.7	27.01
PGSC0003DMT400074143	Potato	nucleus	22.09	26.47
PGSC0003DMT400003198	Potato	nucleus	18.4	21.33
PGSC0003DMT400065377	Potato	nucleus	19.22	20.75
PGSC0003DMT400029591	Potato	nucleus	15.95	20.58
PGSC0003DMT400075520	Potato	nucleus	14.72	20.17
PGSC0003DMT400067657	Potato	nucleus	13.7	19.31
PGSC0003DMT400026068	Potato	nucleus	14.72	17.78
PGSC0003DMT400026065	Potato	nucleus	14.72	17.43
PGSC0003DMT400070680	Potato	nucleus	12.27	15.58
PGSC0003DMT400016342	Potato	nucleus	7.16	13.26
PGSC0003DMT400092769	Potato	nucleus	6.95	13.13
PGSC0003DMT400068637	Potato	nucleus	6.75	12.45

Protein Annotations

EMBL:KX576525	EnsemblPlants:PGSC0003DMT400015373	EnsemblPlantsGene:PGSC0003DMG400005997	EntrezGene:102587007	GO:GO:0003674	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0008270	InterPro:IPR000315	InterPro:Znf_B-box
PANTHER:PTHR31717	PANTHER:PTHR31717:SF40	PFscan:PS50119	PGSC:PGSC0003DMG400005997	RefSeq:XP_006360436.1	SEG:seg
SMART:SM00336	UniParc:UPI000296319F	UniProt:M1A5X4	MapMan:15.5.1.2	:	:

Description

Zinc finger (B-box type) family protein [Source:PGSC_GENE;Acc:PGSC0003DMG400005997]

Coordinates

chr4:+:1835904..1840747

Molecular Weight (calculated)

54353.1 Da

IEP (calculated)

5.582

GRAVY (calculated)

-0.639

Length

489 amino acids

Sequence
(BLAST)

001: MEMEKACEFC MLLKPVVYCE ADAAHLCLSC DAKVHSANAL SNRHPRTLVC ECCGHNPAYI RCSDHQSFMC RDCDRCHHDL SSQHQRKVIT SYMGSPSAKD
101: LAALWGFGLK DLENATPPDQ FISTSNGKAN GAKVTPKKFK RSHSSPGGSS LASELDFTGL VVSAESEVGS ASYYTKVLSL RSRRENTSLI LQQILDLERL
201: QLTEGSNNLT SGESRNNVSS LKNCTSWNVH NKFDCLQSSL DLGPELQDWG STHESPVAES FPLPLPDGDS FWECKSPVQS SQLWPQNLQD LGAYAELECF
301: DDSNMPDVDL TFQNFEELFG EEQDLNNTLL EEDTTCSSME NDSSIDRSDY SYVKKDISIA SSVRTGHSTH FGQGHGEHIP TIKDCPPPIR TNFSSLSFSA
401: SRLSSESSGN EYVDSPAAND QEVSCNSQMD SKENLLAMQK EKKKARLYEK QARNTPRRAR TNLKKQPIRG QVLKAHCYES DALNMSRSF

Best Arabidopsis Sequence Match ( AT1G68190.3 )
(BLAST)

001: MLCIIIIENM ERVCEFCKAY RAVVYCIADT ANLCLTCDAK VHSANSLSGR HLRTVLCDSC KNQPCVVRCF DHKMFLCHGC NDKFHGGGSS EHRRRDLRCY
101: TGCPPAKDFA VMWGFRVMDD DDDVSLEQSF RMVKPKVQRE GGFILEQILE LEKVQLREEN GSSSLTERGD PSPLELPKKP EEQLIDLPQT GKELVVDFSH
201: LSSSSTLGDS FWECKSPYNK NNQLWHQNIQ DIGVCEDTIC SDDDFQIPDI DLTFRNFEEQ FGADPEPIAD SNNVFFVSSL DKSHEMKTFS SSFNNPIFAP
301: KPASSTISFS SSETDNPYSH SEEVISFCPS LSNNTRQKVI TRLKEKKRAR VEEKKA

Arabidopsis Description

B-box zinc finger family protein [Source:TAIR;Acc:AT1G68190]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.