Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 6
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc02g089520.1.1 | Tomato | nucleus | 91.6 | 90.71 |
| PGSC0003DMT400026065 | Potato | nucleus | 87.9 | 86.2 |
| VIT_14s0083g00640.t01 | Wine grape | nucleus | 67.41 | 69.82 |
| KRH01455 | Soybean | nucleus | 54.57 | 62.78 |
| KRH45169 | Soybean | nucleus | 53.58 | 62.36 |
| KRH18308 | Soybean | nucleus | 53.83 | 60.39 |
| KRG93763 | Soybean | nucleus | 54.57 | 60.38 |
| Bra021464.1-P | Field mustard | nucleus | 47.65 | 60.12 |
| AT3G02380.1 | Thale cress | nucleus | 51.36 | 59.94 |
| CDY71818 | Canola | nucleus | 43.7 | 59.8 |
| CDY71884 | Canola | nucleus | 43.46 | 59.66 |
| CDX69493 | Canola | nucleus | 44.44 | 53.41 |
| AT5G15850.1 | Thale cress | nucleus | 46.67 | 53.24 |
| CDY26470 | Canola | nucleus | 43.21 | 52.55 |
| Bra008668.1-P | Field mustard | nucleus | 43.7 | 52.52 |
| Bra023541.1-P | Field mustard | nucleus | 40.74 | 52.38 |
| GSMUA_Achr3P28130_001 | Banana | nucleus | 36.05 | 52.14 |
| CDX85529 | Canola | nucleus | 40.49 | 51.73 |
| CDX90969 | Canola | nucleus | 40.25 | 50.78 |
| AT5G15840.1 | Thale cress | nucleus | 46.67 | 50.67 |
| GSMUA_Achr4P18680_001 | Banana | nucleus | 10.86 | 50.0 |
| GSMUA_Achr9P22690_001 | Banana | nucleus, plastid | 35.06 | 48.8 |
| Bra008669.1-P | Field mustard | nucleus | 43.7 | 48.36 |
| CDX69494 | Canola | nucleus | 43.7 | 48.1 |
| CDY26469 | Canola | nucleus | 42.96 | 47.54 |
| PGSC0003DMT400075520 | Potato | nucleus | 40.0 | 45.38 |
| PGSC0003DMT400067657 | Potato | nucleus | 38.77 | 45.24 |
| PGSC0003DMT400070680 | Potato | nucleus | 37.53 | 39.48 |
| PGSC0003DMT400016342 | Potato | nucleus | 23.95 | 36.74 |
| PGSC0003DMT400068637 | Potato | nucleus | 23.95 | 36.6 |
| PGSC0003DMT400092769 | Potato | nucleus | 21.98 | 34.36 |
| HORVU0Hr1G022380.1 | Barley | cytosol | 16.3 | 23.24 |
| PGSC0003DMT400074143 | Potato | nucleus | 20.99 | 20.83 |
| PGSC0003DMT400044878 | Potato | nucleus | 20.99 | 20.68 |
| PGSC0003DMT400013624 | Potato | nucleus | 20.74 | 20.34 |
| PGSC0003DMT400029591 | Potato | nucleus | 18.77 | 20.05 |
| PGSC0003DMT400003198 | Potato | nucleus | 19.51 | 18.72 |
| PGSC0003DMT400065377 | Potato | nucleus | 19.01 | 17.0 |
| PGSC0003DMT400015373 | Potato | endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, vacuole | 17.78 | 14.72 |
Protein Annotations
| EntrezGene:102598089 | MapMan:15.5.1.2 | ProteinID:ADO40092 | ProteinID:ADO40092.1 | InterPro:CCT_domain | GO:GO:0003674 |
| GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| GO:GO:0008270 | EMBL:HM231142 | InterPro:IPR000315 | InterPro:IPR010402 | EMBL:KX576512 | UniProt:M1AML7 |
| PFAM:PF00643 | PFAM:PF06203 | EnsemblPlantsGene:PGSC0003DMG401010056 | PGSC:PGSC0003DMG401010056 | EnsemblPlants:PGSC0003DMT400026068 | PFscan:PS50119 |
| PFscan:PS51017 | PANTHER:PTHR31319 | PANTHER:PTHR31319:SF39 | SMART:SM00336 | UniParc:UPI0002967781 | RefSeq:XP_006338763.2 |
| InterPro:Znf_B-box | SEG:seg | : | : | : | : |
Description
CONSTANS 3 [Source:PGSC_GENE;Acc:PGSC0003DMG401010056]
Coordinates
chr2:+:45098374..45101577
Molecular Weight (calculated)
44943.2 Da
IEP (calculated)
5.838
GRAVY (calculated)
-0.558
Length
405 amino acids
Sequence
(BLAST)
(BLAST)
001: MLKKENSGGF DGSSNYWARV CDSCRLVTCT IYCQADSAYL CAGCDARIHA ASLVASRHKR VWVCEACECA PAAFLCKADA ASLCASCDAD IHSANPLAHR
101: HHRIPIIPIP GTLYGPPAVD TVGGDSMMIG GSTGEGTEDD GFLSLTQDAD DTTIDEEDED EAASWLLLNH PVKDNNKNNV HNNNNQTNIY GMLFAGEVVD
201: DYLDLAEYGG DSQFNDQYNV NQQQQHYSVP QKSYGGDSVV PVQDGQGKSL FFYHHQQQSH HLNFQLGMDY DNSYTRLGYP ASMSHSVSVS SMDVSVVPES
301: ALSETSNSHS RPQKGTIDLF SGPPIQIPPQ LTPMDREARV LRYREKKKNR KFEKTIRYAS RKAYAETRPR IKGRFAKRTD VEAEVYQMFS TQLMADSSYR
401: IVPSF
101: HHRIPIIPIP GTLYGPPAVD TVGGDSMMIG GSTGEGTEDD GFLSLTQDAD DTTIDEEDED EAASWLLLNH PVKDNNKNNV HNNNNQTNIY GMLFAGEVVD
201: DYLDLAEYGG DSQFNDQYNV NQQQQHYSVP QKSYGGDSVV PVQDGQGKSL FFYHHQQQSH HLNFQLGMDY DNSYTRLGYP ASMSHSVSVS SMDVSVVPES
301: ALSETSNSHS RPQKGTIDLF SGPPIQIPPQ LTPMDREARV LRYREKKKNR KFEKTIRYAS RKAYAETRPR IKGRFAKRTD VEAEVYQMFS TQLMADSSYR
401: IVPSF
001: MLKEESNESG TWARACDTCR SAACTVYCEA DSAYLCTTCD ARVHAANRVA SRHERVRVCQ SCESAPAAFL CKADAASLCT ACDAEIHSAN PLARRHQRVP
101: ILPLSANSCS SMAPSETDAD NDEDDREVAS WLLPNPGKNI GNQNNGFLFG VEYLDLVDYS SSMDNQFEDN QYTHYQRSFG GDGVVPLQVE ESTSHLQQSQ
201: QNFQLGINYG FSSGAHYNNN SLKDLNHSAS VSSMDISVVP ESTASDITVQ HPRTTKETID QLSGPPTQVV QQLTPMEREA RVLRYREKKK TRKFDKTIRY
301: ASRKAYAEIR PRIKGRFAKR IETEAEAEEI FSTSLMSETG YGIVPSF
101: ILPLSANSCS SMAPSETDAD NDEDDREVAS WLLPNPGKNI GNQNNGFLFG VEYLDLVDYS SSMDNQFEDN QYTHYQRSFG GDGVVPLQVE ESTSHLQQSQ
201: QNFQLGINYG FSSGAHYNNN SLKDLNHSAS VSSMDISVVP ESTASDITVQ HPRTTKETID QLSGPPTQVV QQLTPMEREA RVLRYREKKK TRKFDKTIRY
301: ASRKAYAEIR PRIKGRFAKR IETEAEAEEI FSTSLMSETG YGIVPSF
Arabidopsis Description
COL2Zinc finger protein CONSTANS-LIKE 2 [Source:UniProtKB/Swiss-Prot;Acc:Q96502]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.