CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX80136
CDX83320
CDX93029
CDY00411
CDY01304
CDY08765
CDY12145
CDY15121
CDY30639
CDY37838
CDY45614
CDY52535
CDY52540
CDY53021
CDY68650

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G15840.1	CDY00411	AT1G21970.1	17138697
AT5G15840.1	CDY01304	AT1G21970.1	17138697
AT5G15840.1	CDY30639	AT1G21970.1	17138697
AT5G15840.1	CDY68650	AT1G21970.1	17138697
AT5G15840.1	CDY12145	AT2G32950.1	18296627
AT5G15840.1	CDY52540	AT2G32950.1	18296627
AT5G15840.1	CDY12145	AT2G32950.1	18388858
AT5G15840.1	CDY52540	AT2G32950.1	18388858
AT5G15840.1	CDX80136	AT2G47810.1	17138697
AT5G15840.1	CDX83320	AT2G47810.1	17138697
AT5G15840.1	CDY53021	AT2G47810.1	17138697
AT5G15840.1	CDX93029	AT3G24650.1	10743655
AT5G15840.1	CDY15121	AT3G24650.1	10743655
AT5G15840.1	CDY08765	AT5G65683.1	21798944
AT5G15840.1	CDY37838	AT5G65683.1	21798944
AT5G15840.1	CDY45614	AT5G65683.1	21798944
AT5G15840.1	CDY52535	AT5G65683.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX69494	Canola	nucleus	95.63	95.11
AT5G15840.1	Thale cress	nucleus	73.5	72.12
CDY69474	Canola	nucleus, plastid	14.48	55.21
CDY71884	Canola	nucleus	42.9	53.22
CDY71818	Canola	nucleus	42.62	52.7
CDX90969	Canola	nucleus	46.17	52.65
CDX85529	Canola	nucleus	45.36	52.37
CDX69493	Canola	nucleus	47.54	51.63
CDY26470	Canola	nucleus	45.9	50.45
VIT_14s0083g00640.t01	Wine grape	nucleus	52.73	49.36
CDX74261	Canola	nucleus	30.6	49.12
Solyc02g089500.2.1	Tomato	nucleus	18.58	47.89
KRG93763	Soybean	nucleus	47.81	47.81
KRH18308	Soybean	nucleus	46.72	47.37
KRH45169	Soybean	nucleus	44.54	46.84
KRH01455	Soybean	nucleus	44.26	46.02
CDX91989	Canola	nucleus	28.14	45.18
CDY02749	Canola	nucleus, plastid	31.69	44.79
CDY19821	Canola	nucleus	34.97	43.54
CDX88145	Canola	nucleus	34.7	43.2
CDY36171	Canola	nucleus	34.15	43.1
PGSC0003DMT400026068	Potato	nucleus	47.54	42.96
PGSC0003DMT400026065	Potato	nucleus	48.36	42.86
CDY45597	Canola	nucleus	33.61	42.56
CDX87105	Canola	nucleus, plastid	34.7	40.06
CDX80476	Canola	nucleus, plastid	34.7	38.6
CDY58843	Canola	nucleus, plastid	35.52	38.01
CDY25892	Canola	nucleus	33.33	36.64
CDY49730	Canola	nucleus	20.49	34.4
CDY53026	Canola	nucleus	21.04	23.05
CDY07979	Canola	nucleus	22.13	23.01
CDX80141	Canola	nucleus	20.77	22.89
CDY15696	Canola	nucleus	18.03	22.84
CDY35952	Canola	nucleus	22.4	22.22
CDY28029	Canola	nucleus	22.4	22.04
CDY22125	Canola	nucleus	21.86	21.86
CDY48743	Canola	nucleus	20.77	21.71
CDY05691	Canola	nucleus	20.49	21.61
CDX86318	Canola	nucleus	20.22	20.67
CDX85321	Canola	nucleus	20.22	20.61
CDX74034	Canola	nucleus	21.58	20.26
CDY66639	Canola	nucleus	21.58	19.6
CDY64255	Canola	nucleus	19.67	19.41
CDY55657	Canola	nucleus	20.22	19.17
CDY68819	Canola	nucleus	20.22	19.12
CDY30385	Canola	nucleus	20.22	19.12
HORVU0Hr1G022380.1	Barley	cytosol	14.21	18.31
CDY11755	Canola	nucleus	19.13	17.81
CDX90119	Canola	nucleus	18.85	16.47
CDY04213	Canola	nucleus	13.93	15.18
CDY48428	Canola	nucleus	8.74	11.85
CDY07393	Canola	nucleus	15.03	10.26

Protein Annotations

MapMan:15.5.1.2	ProteinID:AAC27695.1	InterPro:CCT_domain	EnsemblPlants:CDY26469	ProteinID:CDY26469	ProteinID:CDY26469.1
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0008270	EnsemblPlantsGene:GSBRNA2T00035272001	InterPro:IPR000315	InterPro:IPR010402	GO:O48884
UniProt:O48884	PFAM:PF00643	PFAM:PF06203	PFscan:PS50119	PFscan:PS51017	PANTHER:PTHR31319
PANTHER:PTHR31319:SF39	SMART:SM00336	UniParc:UPI00000A6C15	InterPro:Znf_B-box	SEG:seg	:

Description

BnaC09g41990DBnaC09g41990D protein [Source:UniProtKB/TrEMBL;Acc:O48884]

Coordinates

chrLK032190:-:322090..323550

Molecular Weight (calculated)

41716.6 Da

IEP (calculated)

7.915

GRAVY (calculated)

-0.874

Length

366 amino acids

Sequence
(BLAST)

001: MFKQESNNIC NRENNRGARA CDTCGSTICT VYCHADSAYL CNSCDAQVHS ANRVASRHKR VRVCESCERA PAAFMCEADD VSLCTACDLE VHSANPLARR
101: HQRVPVVPII GNSCSSLATA NHTTVTEPEK RVVLVQEDAK ETASWLFPKN SDYHNNNNNQ NNELLFSDDY LDLADYNSSM DYKFTSQYNQ PRHKQDCIVP
201: EKNYSGDRVV PLQLEETRGN LRNKQQNITY GSSGSQYNNN GSINHNAYNP SMETDFVPEQ TAPDTTVSHP KTHKGKTAQL PEPLIQILSP MDREARVLRY
301: REKKKRRKFE KTIRYASRKA YAERRPRING RFAKMSETEV EDQEYNTMLM YCDTGYGIVP SFYGQK

Best Arabidopsis Sequence Match ( AT5G15840.1 )
(BLAST)

001: MLKQESNDIG SGENNRARPC DTCRSNACTV YCHADSAYLC MSCDAQVHSA NRVASRHKRV RVCESCERAP AAFLCEADDA SLCTACDSEV HSANPLARRH
101: QRVPILPISG NSFSSMTTTH HQSEKTMTDP EKRLVVDQEE GEEGDKDAKE VASWLFPNSD KNNNNQNNGL LFSDEYLNLV DYNSSMDYKF TGEYSQHQQN
201: CSVPQTSYGG DRVVPLKLEE SRGHQCHNQQ NFQFNIKYGS SGTHYNDNGS INHNAYISSM ETGVVPESTA CVTTASHPRT PKGTVEQQPD PASQMITVTQ
301: LSPMDREARV LRYREKRKTR KFEKTIRYAS RKAYAEIRPR VNGRFAKREI EAEEQGFNTM LMYNTGYGIV PSF

Arabidopsis Description

COZinc finger protein CONSTANS [Source:UniProtKB/Swiss-Prot;Acc:Q39057]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.