Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 1
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY53021 | Canola | nucleus | 87.79 | 97.42 |
| Bra004428.1-P | Field mustard | nucleus | 86.63 | 96.13 |
| CDX83320 | Canola | nucleus | 78.49 | 86.54 |
| AT2G47810.1 | Thale cress | nucleus | 77.33 | 83.12 |
| Solyc09g074760.1.1 | Tomato | nucleus | 49.42 | 61.59 |
| PGSC0003DMT400029608 | Potato | nucleus | 49.42 | 59.44 |
| CDX95014 | Canola | nucleus | 40.12 | 52.27 |
| CDX74880 | Canola | nucleus | 40.7 | 49.3 |
| CDY21888 | Canola | nucleus | 43.02 | 47.13 |
| CDY20167 | Canola | nucleus | 43.02 | 46.84 |
| CDY30123 | Canola | nucleus | 43.02 | 44.85 |
| CDY07691 | Canola | nucleus | 40.7 | 42.17 |
| CDY40552 | Canola | nucleus | 44.77 | 41.62 |
| CDY14422 | Canola | nucleus | 39.53 | 41.46 |
| CDY28916 | Canola | nucleus | 44.77 | 41.4 |
| CDY41061 | Canola | nucleus | 44.19 | 41.3 |
| CDY25955 | Canola | nucleus | 44.77 | 41.18 |
| CDY18462 | Canola | nucleus | 40.7 | 40.0 |
| CDX75855 | Canola | nucleus | 43.02 | 39.78 |
| CDX82424 | Canola | nucleus | 43.02 | 39.15 |
| CDY72254 | Canola | nucleus | 40.7 | 37.63 |
| CDX93117 | Canola | nucleus | 44.77 | 36.84 |
| CDX89608 | Canola | nucleus | 44.77 | 36.84 |
| CDY18460 | Canola | nucleus | 40.7 | 36.08 |
| CDY37212 | Canola | nucleus | 43.6 | 36.06 |
| CDX81449 | Canola | nucleus | 43.6 | 36.06 |
| CDX91501 | Canola | nucleus | 40.7 | 33.02 |
| CDY25952 | Canola | nucleus | 38.37 | 31.88 |
| CDY41063 | Canola | nucleus | 38.37 | 31.58 |
| CDX79714 | Canola | nucleus | 40.7 | 31.53 |
| CDX73560 | Canola | nucleus | 41.86 | 31.44 |
| CDX77785 | Canola | cytosol | 24.42 | 31.34 |
| CDX78169 | Canola | nucleus | 41.86 | 28.02 |
| CDY00411 | Canola | nucleus | 36.63 | 27.39 |
| CDY17715 | Canola | nucleus | 36.63 | 27.27 |
| CDY01304 | Canola | nucleus | 36.63 | 27.27 |
| CDY46752 | Canola | nucleus | 40.7 | 26.22 |
| CDY68650 | Canola | nucleus | 35.47 | 20.33 |
| CDY16839 | Canola | cytosol, nucleus, plastid | 19.19 | 19.53 |
| CDX87185 | Canola | cytosol, nucleus, plastid | 19.19 | 19.53 |
| CDX69967 | Canola | cytosol, nucleus, plastid | 18.02 | 18.79 |
| CDY21520 | Canola | cytosol, nucleus, plastid | 18.02 | 18.67 |
| CDY30639 | Canola | nucleus | 36.63 | 18.42 |
| CDY38832 | Canola | nucleus | 24.42 | 18.34 |
| CDY44761 | Canola | cytosol | 17.44 | 12.5 |
| CDY40760 | Canola | nucleus | 16.86 | 11.69 |
Protein Annotations
| Gene3D:1.10.20.10 | MapMan:15.5.51.2 | GO:A0A078CSJ8 | InterPro:CBFA_NFYB_domain | EnsemblPlants:CDX80136 | ProteinID:CDX80136 |
| ProteinID:CDX80136.1 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006355 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0043565 | GO:GO:0046982 |
| EnsemblPlantsGene:GSBRNA2T00133043001 | InterPro:Histone-fold | InterPro:IPR009072 | PFAM:PF00808 | PRINTS:PR00615 | ScanProsite:PS00685 |
| PANTHER:PTHR11064 | PANTHER:PTHR11064:SF88 | SUPFAM:SSF47113 | InterPro:Transcrpt_fac_NFYB/HAP3_CS | UniParc:UPI0004EE2388 | : |
Description
BnaA05g00200D
Coordinates
chrLK031819:-:2053349..2054000
Molecular Weight (calculated)
19842.4 Da
IEP (calculated)
7.016
GRAVY (calculated)
-0.783
Length
172 amino acids
Sequence
(BLAST)
(BLAST)
001: MSKGLFIRFI HTNIMFDGWE NYPSFQNPIP RFQNYNFAST SSHHHQHHDG LVVEQEENMV IKEQDRLLPI ANVGRIMKNI LPPNAKISKE AKETMQECVS
101: EFISFVTGEA SDKCHKEKRK TVNGDDICWA MANLGFDDYA EQLKKYLNRY RVIEGEKSNH HGKGEAKSSP DN
101: EFISFVTGEA SDKCHKEKRK TVNGDDICWA MANLGFDDYA EQLKKYLNRY RVIEGEKSNH HGKGEAKSSP DN
001: MAGNYHSFQN PIPRYQNYNF GSSSSNHQHE HDGLVVVVED QQQEESMMVK EQDRLLPIAN VGRIMKNILP ANAKVSKEAK ETMQECVSEF ISFVTGEASD
101: KCHKEKRKTV NGDDICWAMA NLGFDDYAAQ LKKYLHRYRV LEGEKPNHHG KGGPKSSPDN
101: KCHKEKRKTV NGDDICWAMA NLGFDDYAAQ LKKYLHRYRV LEGEKPNHHG KGGPKSSPDN
Arabidopsis Description
NFYB5NF-YB5 [Source:UniProtKB/TrEMBL;Acc:A0A178VUG0]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.