Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
- cytosol 1
- mitochondrion 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra016397.1-P | Field mustard | cytosol | 55.46 | 66.15 |
| CDY00411 | Canola | nucleus | 37.99 | 37.83 |
| CDY01304 | Canola | nucleus | 37.99 | 37.66 |
| CDY21888 | Canola | nucleus | 25.33 | 36.94 |
| CDY20167 | Canola | nucleus | 25.33 | 36.71 |
| CDX74880 | Canola | nucleus | 22.71 | 36.62 |
| CDY30123 | Canola | nucleus | 25.33 | 35.15 |
| CDX75855 | Canola | nucleus | 26.64 | 32.8 |
| CDX82424 | Canola | nucleus | 26.64 | 32.28 |
| CDY28916 | Canola | nucleus | 25.76 | 31.72 |
| CDY41061 | Canola | nucleus | 25.33 | 31.52 |
| CDY40552 | Canola | nucleus | 25.33 | 31.35 |
| CDY25955 | Canola | nucleus | 25.33 | 31.02 |
| CDY07691 | Canola | nucleus | 22.27 | 30.72 |
| CDX95014 | Canola | nucleus | 17.47 | 30.3 |
| CDY25952 | Canola | nucleus | 27.07 | 29.95 |
| CDY14422 | Canola | nucleus | 20.96 | 29.27 |
| CDY41063 | Canola | nucleus | 26.64 | 29.19 |
| CDX77785 | Canola | cytosol | 17.03 | 29.1 |
| CDX83320 | Canola | nucleus | 19.21 | 28.21 |
| CDY68650 | Canola | nucleus | 36.68 | 28.0 |
| CDY18462 | Canola | nucleus | 21.4 | 28.0 |
| CDY17715 | Canola | nucleus | 27.95 | 27.71 |
| CDY53021 | Canola | nucleus | 17.9 | 26.45 |
| CDX91501 | Canola | nucleus | 24.02 | 25.94 |
| CDY72254 | Canola | nucleus | 20.96 | 25.81 |
| CDY18460 | Canola | nucleus | 21.83 | 25.77 |
| CDY30639 | Canola | nucleus | 37.12 | 24.85 |
| CDX80136 | Canola | nucleus | 18.34 | 24.42 |
| CDX89608 | Canola | nucleus | 21.83 | 23.92 |
| CDX93117 | Canola | nucleus | 21.83 | 23.92 |
| CDX81449 | Canola | nucleus | 21.4 | 23.56 |
| CDX79714 | Canola | nucleus | 22.71 | 23.42 |
| TraesCS6B01G316700.1 | Wheat | cytosol, nucleus, plastid | 16.59 | 23.31 |
| CDX73560 | Canola | nucleus | 23.14 | 23.14 |
| TraesCS6D01G268100.1 | Wheat | cytosol, nucleus, plastid | 16.16 | 22.7 |
| CDY37212 | Canola | nucleus | 20.52 | 22.6 |
| TraesCS6A01G287400.2 | Wheat | cytosol, mitochondrion, nucleus, plastid | 15.72 | 21.05 |
| CDX78169 | Canola | nucleus | 23.14 | 20.62 |
| Os02t0725900-01 | Rice | nucleus | 16.59 | 20.43 |
| CDY46752 | Canola | nucleus | 23.14 | 19.85 |
| CDX69967 | Canola | cytosol, nucleus, plastid | 13.54 | 18.79 |
| CDY21520 | Canola | cytosol, nucleus, plastid | 13.54 | 18.67 |
| CDY16839 | Canola | cytosol, nucleus, plastid | 13.54 | 18.34 |
| CDX87185 | Canola | cytosol, nucleus, plastid | 13.54 | 18.34 |
| Zm00001d017899_P001 | Maize | nucleus | 15.28 | 17.77 |
| HORVU6Hr1G072140.1 | Barley | cytosol | 11.79 | 16.56 |
| EES05602 | Sorghum | nucleus | 13.97 | 16.24 |
| CDY44761 | Canola | cytosol | 12.66 | 12.08 |
| CDY40760 | Canola | nucleus | 12.23 | 11.29 |
Protein Annotations
| EnsemblPlants:CDY38832 | EnsemblPlantsGene:GSBRNA2T00066656001 | Gene3D:1.10.20.10 | GO:A0A078HLQ8 | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0046982 | InterPro:Histone-fold | InterPro:IPR009072 | PANTHER:PTHR11064 | PANTHER:PTHR11064:SF79 |
| PRINTS:PR00615 | ProteinID:CDY38832 | ProteinID:CDY38832.1 | SEG:seg | SUPFAM:SSF47113 | UniParc:UPI0004EDAE54 |
| UniProt:A0A078HLQ8 | MapMan:35.1 | : | : | : | : |
Description
BnaC08g20060DBnaC08g20060D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HLQ8]
Coordinates
chrLK032433:-:226954..228623
Molecular Weight (calculated)
24352.5 Da
IEP (calculated)
5.199
GRAVY (calculated)
-0.572
Length
229 amino acids
Sequence
(BLAST)
(BLAST)
001: MPDCPVQGAS IEFGPVKQLN PDNACAGDKN KGAVPQEEPC MPPEQDQYLP IASVTRIMRN AFGYDRKYIS FVTAEASDTC QSERRTTITA GDMLSAMSNL
101: GFEDYVEPLN VFIHRYRLSE TDRGCSLRGE TSSFDPAYGG SGTGFHGPSH HGPTPHGPPP HGTLPYGPLP HVPPPPGPYG CGMLDQSMVL GGGDQYYPNG
201: SGQDLITGGG GSSSSMNGMP LCDHCGHYK
101: GFEDYVEPLN VFIHRYRLSE TDRGCSLRGE TSSFDPAYGG SGTGFHGPSH HGPTPHGPPP HGTLPYGPLP HVPPPPGPYG CGMLDQSMVL GGGDQYYPNG
201: SGQDLITGGG GSSSSMNGMP LCDHCGHYK
001: MERGAPFSHY QLPKSISELN LDQHSNNPTP MTSSVVVAGA GDKNNGIVVQ QQPPCVAREQ DQYMPIANVI RIMRKTLPSH AKISDDAKET IQECVSEYIS
101: FVTGEANERC QREQRKTITA EDILWAMSKL GFDNYVDPLT VFINRYREIE TDRGSALRGE PPSLRQTYGG NGIGFHGPSH GLPPPGPYGY GMLDQSMVMG
201: GGRYYQNGSS GQDESSVGGG SSSSINGMPA FDHYGQYK
101: FVTGEANERC QREQRKTITA EDILWAMSKL GFDNYVDPLT VFINRYREIE TDRGSALRGE PPSLRQTYGG NGIGFHGPSH GLPPPGPYGY GMLDQSMVMG
201: GGRYYQNGSS GQDESSVGGG SSSSINGMPA FDHYGQYK
Arabidopsis Description
NFYB9Nuclear transcription factor Y subunit B-9 [Source:UniProtKB/Swiss-Prot;Acc:Q9SFD8]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.