Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, plastid, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- cytosol 1
- mitochondrion 2
- plastid 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS6D01G268100.1 | Wheat | cytosol, nucleus, plastid | 92.4 | 96.93 |
| TraesCS6B01G316700.1 | Wheat | cytosol, nucleus, plastid | 92.4 | 96.93 |
| HORVU6Hr1G072140.1 | Barley | cytosol | 64.33 | 67.48 |
| Os02t0725900-01 | Rice | nucleus | 52.05 | 47.85 |
| Zm00001d017899_P001 | Maize | nucleus | 47.95 | 41.62 |
| EES05602 | Sorghum | nucleus | 44.44 | 38.58 |
| TraesCS1A01G411700.1 | Wheat | nucleus | 26.32 | 33.09 |
| TraesCS3A01G457000.1 | Wheat | cytosol, mitochondrion, nucleus, plastid | 29.82 | 29.65 |
| TraesCS3A01G352900.1 | Wheat | nucleus | 25.73 | 26.99 |
| TraesCS7A01G486400.1 | Wheat | cytosol | 15.79 | 25.47 |
| TraesCS3A01G457100.1 | Wheat | nucleus | 27.49 | 24.74 |
| TraesCS1A01G288500.3 | Wheat | nucleus | 24.56 | 23.08 |
| TraesCS7A01G214800.1 | Wheat | cytosol | 26.9 | 22.22 |
| TraesCS3A01G026900.1 | Wheat | nucleus | 25.15 | 21.29 |
| Bra016397.1-P | Field mustard | cytosol | 23.39 | 20.83 |
| TraesCS2A01G359400.1 | Wheat | nucleus | 28.07 | 19.28 |
| TraesCS6A01G287300.1 | Wheat | nucleus | 27.49 | 19.11 |
| TraesCS2A01G173500.1 | Wheat | nucleus | 23.98 | 18.14 |
| TraesCS7A01G214600.1 | Wheat | nucleus | 28.07 | 18.05 |
| TraesCS7A01G214700.1 | Wheat | nucleus | 26.32 | 16.42 |
| TraesCS7A01G214900.1 | Wheat | nucleus | 25.15 | 16.17 |
| CDY38832 | Canola | nucleus | 21.05 | 15.72 |
| TraesCS7A01G214500.1 | Wheat | nucleus | 26.9 | 15.44 |
| TraesCS3A01G450700.1 | Wheat | cytosol, mitochondrion, nucleus | 18.13 | 10.65 |
Protein Annotations
| EnsemblPlants:TraesCS6A01G287400.2 | EnsemblPlantsGene:TraesCS6A01G287400 | Gene3D:1.10.20.10 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0046982 | InterPro:CBFA_NFYB_domain | InterPro:Histone-fold | InterPro:IPR009072 | PANTHER:PTHR11064 | PANTHER:PTHR11064:SF38 |
| PFAM:PF00808 | PRINTS:PR00615 | SEG:seg | SUPFAM:SSF47113 | MapMan:15.5.51.2 | : |
Description
No Description!
Coordinates
chr6A:-:519595704..519596283
Molecular Weight (calculated)
18430.8 Da
IEP (calculated)
6.524
GRAVY (calculated)
-0.392
Length
171 amino acids
Sequence
(BLAST)
(BLAST)
001: MGGSSKKRVL SLVCVSGGQR GEGDAENPAA EGGSALPMAN VVRLMRRVLP SNVKIAETAK QLTHDCAVEF VGFVGGEASE RARSEHRRTV APEDFTWSCQ
101: SLGLDSYVQP MQTYLQGYRE YDIARGRSSR GARPPAPPAI ASFLPPGQPV TVTEEELEFL RSVVPPPPEG Y
101: SLGLDSYVQP MQTYLQGYRE YDIARGRSSR GARPPAPPAI ASFLPPGQPV TVTEEELEFL RSVVPPPPEG Y
001: MERGAPFSHY QLPKSISELN LDQHSNNPTP MTSSVVVAGA GDKNNGIVVQ QQPPCVAREQ DQYMPIANVI RIMRKTLPSH AKISDDAKET IQECVSEYIS
101: FVTGEANERC QREQRKTITA EDILWAMSKL GFDNYVDPLT VFINRYREIE TDRGSALRGE PPSLRQTYGG NGIGFHGPSH GLPPPGPYGY GMLDQSMVMG
201: GGRYYQNGSS GQDESSVGGG SSSSINGMPA FDHYGQYK
101: FVTGEANERC QREQRKTITA EDILWAMSKL GFDNYVDPLT VFINRYREIE TDRGSALRGE PPSLRQTYGG NGIGFHGPSH GLPPPGPYGY GMLDQSMVMG
201: GGRYYQNGSS GQDESSVGGG SSSSINGMPA FDHYGQYK
Arabidopsis Description
NFYB9Nuclear transcription factor Y subunit B-9 [Source:UniProtKB/Swiss-Prot;Acc:Q9SFD8]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.