Factsheet for Os02t0725900-01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6D01G268100.1	Wheat	cytosol, nucleus, plastid	48.39	55.21
TraesCS6B01G316700.1	Wheat	cytosol, nucleus, plastid	48.39	55.21
TraesCS6A01G287400.2	Wheat	cytosol, mitochondrion, nucleus, plastid	47.85	52.05
HORVU6Hr1G072140.1	Barley	cytosol	38.17	43.56
EES05602	Sorghum	nucleus	44.09	41.62
Zm00001d017899_P001	Maize	nucleus	43.55	41.12
Os05t0573500-01	Rice	nucleus	23.66	30.77
Os01t0935200-01	Rice	nucleus	26.88	28.25
Os01t0834400-02	Rice	nucleus	25.81	26.97
Os05t0463800-02	Rice	nucleus	23.12	23.24
Bra016397.1-P	Field mustard	cytosol	21.51	20.83
Os03t0413000-01	Rice	nucleus	24.19	20.55
Os02t0725700-01	Rice	nucleus	25.81	18.9
Os07t0606600-01	Rice	nucleus	22.58	18.75
Os06t0285200-01	Rice	nucleus	24.19	18.0
Os08t0174500-01	Rice	nucleus	26.88	16.84
CDY38832	Canola	nucleus	20.43	16.59
Os08t0383700-02	Rice	cytosol, extracellular	7.53	5.65

Protein Annotations

Gene3D:1.10.20.10	MapMan:15.5.51.2	EntrezGene:4330587	EMBL:AJ300218	EMBL:AK241920	ProteinID:BAD12929.1
ProteinID:BAD16076.1	ProteinID:BAF09901.1	ProteinID:BAS80696.1	InterPro:CBFA_NFYB_domain	ProteinID:EAZ24469.1	EMBL:EU847013
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0046982	EMBL:HQ833287	InterPro:Histone-fold	InterPro:IPR009072
EnsemblPlantsGene:Os02g0725900	EnsemblPlants:Os02t0725900-01	PFAM:PF00808	PANTHER:PTHR11064	PANTHER:PTHR11064:SF38	UniProt:Q0DXY7
UniProt:Q6Z348	SUPFAM:SSF47113	UniParc:UPI000058E2F5	RefSeq:XP_015624776.1	SEG:seg	:

Description

HAP3K SUBUNIT OF CCAAT-BOX BINDING COMPLEXComponent of the NF-Y/HAP transcription factor complex, Regulation of endosperm development (Os02t0725900-01)

Coordinates

chr2:-:30191485..30192488

Molecular Weight (calculated)

19702.3 Da

IEP (calculated)

9.219

GRAVY (calculated)

-0.505

Length

186 amino acids

Sequence
(BLAST)

001: MAGNKKRGGR NMDQVKKAAV RSDGVGGSAT NAELPMANLV RLIKKVLPGK AKIGGAAKGL THDCAVEFVG FVGDEASEKA KAEHRRTVAP EDYLGSFGDL
101: GFDRYVDPMD AYIHGYREFE RAGGNRRVAP PPPAAATPLT PGGPTFTDAE LQFLRSVIPS RSDDEYSGSS PAIGGYGYGY GYGKNM

Best Arabidopsis Sequence Match ( AT1G21970.1 )
(BLAST)

001: MERGAPFSHY QLPKSISELN LDQHSNNPTP MTSSVVVAGA GDKNNGIVVQ QQPPCVAREQ DQYMPIANVI RIMRKTLPSH AKISDDAKET IQECVSEYIS
101: FVTGEANERC QREQRKTITA EDILWAMSKL GFDNYVDPLT VFINRYREIE TDRGSALRGE PPSLRQTYGG NGIGFHGPSH GLPPPGPYGY GMLDQSMVMG
201: GGRYYQNGSS GQDESSVGGG SSSSINGMPA FDHYGQYK

Arabidopsis Description

NFYB9Nuclear transcription factor Y subunit B-9 [Source:UniProtKB/Swiss-Prot;Acc:Q9SFD8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.