Factsheet for Os06t0285200-01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
plastid 2
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS7A01G214800.1	Wheat	cytosol	41.2	49.76
TraesCS7B01G121900.1	Wheat	nucleus	51.6	46.07
TraesCS7A01G214700.1	Wheat	nucleus	50.0	45.62
TraesCS7D01G216600.1	Wheat	nucleus	52.4	44.71
HORVU7Hr1G043520.1	Barley	nucleus	56.4	44.2
TraesCS7A01G214600.1	Wheat	nucleus	46.8	43.98
Os05t0573500-01	Rice	nucleus	24.8	43.36
TraesCS7A01G214900.1	Wheat	nucleus	46.0	43.23
Zm00001d045772_P001	Maize	nucleus, plastid	45.2	43.13
TraesCS7D01G216800.1	Wheat	nucleus	51.2	43.1
OQU76250	Sorghum	nucleus	44.8	42.91
TraesCS7B01G121800.1	Wheat	nucleus	51.2	42.67
TraesCS7A01G214500.1	Wheat	nucleus	50.8	42.62
Os02t0725700-01	Rice	nucleus	38.0	37.4
Os01t0935200-01	Rice	nucleus	26.0	36.72
Os01t0834400-02	Rice	nucleus	25.2	35.39
Os07t0606600-01	Rice	nucleus	31.2	34.82
Os05t0463800-02	Rice	nucleus	25.6	34.59
Os03t0413000-01	Rice	nucleus	30.0	34.25
PGSC0003DMT400057379	Potato	nucleus	20.4	29.48
Solyc07g065580.1.1	Tomato	nucleus	19.6	27.53
Solyc07g065570.1.1	Tomato	nucleus	20.4	27.13
Os08t0174500-01	Rice	nucleus	28.8	24.24
Os02t0725900-01	Rice	nucleus	18.0	24.19
KRH70381	Soybean	cytosol	20.4	22.57
KRH49798	Soybean	cytosol, golgi, nucleus	18.0	19.48
Os08t0383700-02	Rice	cytosol, extracellular	5.6	5.65

Protein Annotations

Gene3D:1.10.20.10	MapMan:15.5.51.2	EntrezGene:4340772	EMBL:AB288035	EMBL:AK109660	ProteinID:BAD69026.1
ProteinID:BAF19317.1	ProteinID:BAS97267.1	InterPro:CBFA_NFYB_domain	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0043565	GO:GO:0046982	InterPro:Histone-fold	InterPro:IPR009072	EnsemblPlantsGene:Os06g0285200	EnsemblPlants:Os06t0285200-01
PFAM:PF00808	PRINTS:PR00615	ScanProsite:PS00685	PANTHER:PTHR11064	PANTHER:PTHR11064:SF86	UniProt:Q5VNF4
SUPFAM:SSF47113	InterPro:Transcrpt_fac_NFYB/HAP3_CS	UniParc:UPI0000458024	RefSeq:XP_015642670.1	SEG:seg	:

Description

HAP3D SUBUNIT OF CCAAT-BOX BINDING COMPLEXSimilar to Leafy cotyledon 1-like L1L protein. (Os06t0285200-01)

Coordinates

chr6:+:10137823..10138746

Molecular Weight (calculated)

25966.5 Da

IEP (calculated)

5.550

GRAVY (calculated)

-0.310

Length

250 amino acids

Sequence
(BLAST)

001: MEPAFPNGGA AAPPPPMAAE QLPPAAAVVR EQDRLMPIAN VIRIMRRVLP PHAKISDDAK EVIQECVSEF ISFVTGEAND RCHREHRKTV TAEDLVWAMD
101: RLGFDDYVPP LTAYLRRMRE YEGGGSGGGG GGGRGAAAAP AVVPPPPPPP PEDAFRYVQV HHPVYAAPGE PVQGYGYPVA MSSALPAPHV HVGVRGGGQH
201: EVFGGGPAPL AVYYGGAPYG EASSRGGCSA ADEGSSSSSA SPAPVGPNYE

Best Arabidopsis Sequence Match ( AT5G47670.2 )
(BLAST)

001: MAEGSMRPPE FNQPNKTSNG GEEECTVREQ DRFMPIANVI RIMRRILPAH AKISDDSKET IQECVSEYIS FITGEANERC QREQRKTITA EDVLWAMSKL
101: GFDDYIEPLT LYLHRYRELE GERGVSCSAG SVSMTNGLVV KRPNGTMTEY GAYGPVPGIH MAQYHYRHQN GFVFSGNEPN SKMSGSSSGA SGARVEVFPT
201: QQHKY

Arabidopsis Description

NFYB6Nuclear transcription factor Y subunit B-6 [Source:UniProtKB/Swiss-Prot;Acc:Q84W66]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.