Factsheet for Os02t0725700-01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6D01G268000.1	Wheat	nucleus	72.44	74.8
TraesCS6A01G287300.1	Wheat	nucleus	72.44	74.8
TraesCS6B01G316600.1	Wheat	nucleus	72.05	74.39
HORVU6Hr1G072110.1	Barley	nucleus	70.47	73.97
KXG30848	Sorghum	nucleus	70.08	64.49
Zm00001d017898_P001	Maize	nucleus	70.08	64.03
Zm00001d051697_P001	Maize	nucleus	65.75	63.26
KRG89094	Soybean	cytosol	36.22	54.76
KRH66068	Soybean	nucleus	37.01	54.02
Bra012301.1-P	Field mustard	nucleus	38.98	49.5
Bra031356.1-P	Field mustard	nucleus	39.76	47.2
CDY00411	Canola	nucleus	40.55	44.78
CDY01304	Canola	nucleus	40.55	44.59
AT1G21970.1	Thale cress	nucleus	40.94	43.7
Os05t0573500-01	Rice	nucleus	23.62	41.96
Os05t0463800-02	Rice	nucleus	29.13	40.0
Os01t0834400-02	Rice	nucleus	26.77	38.2
Os06t0285200-01	Rice	nucleus	37.4	38.0
Os01t0935200-01	Rice	nucleus	25.98	37.29
Os07t0606600-01	Rice	nucleus	31.5	35.71
Os03t0413000-01	Rice	nucleus	30.32	35.16
CDY68650	Canola	nucleus	39.37	33.33
CDY30639	Canola	nucleus	40.94	30.41
Os08t0174500-01	Rice	nucleus	30.71	26.26
Os02t0725900-01	Rice	nucleus	18.9	25.81
Os08t0383700-02	Rice	cytosol, extracellular	6.69	6.85

Protein Annotations

Gene3D:1.10.20.10	MapMan:15.5.51.2	EntrezGene:4330586	EMBL:AB288036	EMBL:AK107861	ProteinID:BAD12927.1
ProteinID:BAF09900.1	ProteinID:BAS80695.1	InterPro:CBFA_NFYB_domain	ProteinID:EAZ24468.1	GO:GO:0000003	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006355	GO:GO:0006629	GO:GO:0007154
GO:GO:0007165	GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009628
GO:GO:0009719	GO:GO:0009738	GO:GO:0009785	GO:GO:0009790	GO:GO:0009791	GO:GO:0009793
GO:GO:0009987	GO:GO:0010262	GO:GO:0043565	GO:GO:0045723	GO:GO:0045893	GO:GO:0046982
InterPro:Histone-fold	InterPro:IPR009072	EnsemblPlantsGene:Os02g0725700	EnsemblPlants:Os02t0725700-01	PFAM:PF00808	PRINTS:PR00615
ScanProsite:PS00685	PANTHER:PTHR11064	PANTHER:PTHR11064:SF20	UniProt:Q6ZFM9	SUPFAM:SSF47113	InterPro:Transcrpt_fac_NFYB/HAP3_CS
UniParc:UPI00003503CC	RefSeq:XP_015624920.1	SEG:seg	:	:	:

Description

HAP3E SUBUNIT OF CCAAT-BOX BINDING COMPLEXHistone-fold domain containing protein. (Os02t0725700-01)

Coordinates

chr2:-:30164300..30165377

Molecular Weight (calculated)

27148.8 Da

IEP (calculated)

6.734

GRAVY (calculated)

-0.569

Length

254 amino acids

Sequence
(BLAST)

001: MEAGYPGTAA NGAAADGNGG AQQAAAAPAI REQDRLMPIA NVIRIMRRVL PAHAKISDDA KETIQECVSE YISFITGEAN ERCQREQRKT ITAEDVLWAM
101: SRLGFDDYVE PLGVYLHRYR EFEGESRGVG VGVGAARGDH HHGHVGGMLK SRAQGSMVTH HDMQMHAAMY GGGAVPPPPH PPPHHHAFHQ LMPPHHGQYA
201: PPYDMYGGEH GMAAYYGGMY APGSGGDGSG SSGSGGAGTP QTVNFEHQHP FGYK

Best Arabidopsis Sequence Match ( AT5G47670.1 )
(BLAST)

001: MERGGFHGYR KLSVNNTTPS PPGLAANFLM AEGSMRPPEF NQPNKTSNGG EEECTVREQD RFMPIANVIR IMRRILPAHA KISDDSKETI QECVSEYISF
101: ITGEANERCQ REQRKTITAE DVLWAMSKLG FDDYIEPLTL YLHRYRELEG ERGVSCSAGS VSMTNGLVVK RPNGTMTEYG AYGPVPGIHM AQYHYRHQNG
201: FVFSGNEPNS KMSGSSSGAS GARVEVFPTQ QHKY

Arabidopsis Description

NFYB6Nuclear transcription factor Y subunit B-6 [Source:UniProtKB/Swiss-Prot;Acc:Q84W66]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.