CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
plastid 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, plastid
BaCelLo:	nucleus
iPSORT:	plastid
MultiLoc:	nucleus
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d017898_P001	Maize	nucleus	88.77	88.13
Zm00001d051697_P001	Maize	nucleus	83.7	87.5
TraesCS6A01G287300.1	Wheat	nucleus	62.68	70.33
Os02t0725700-01	Rice	nucleus	64.49	70.08
TraesCS6D01G268000.1	Wheat	nucleus	62.32	69.92
TraesCS6B01G316600.1	Wheat	nucleus	61.96	69.51
HORVU6Hr1G072110.1	Barley	nucleus	60.87	69.42
KRH66068	Soybean	nucleus	35.14	55.75
KRG89094	Soybean	cytosol	33.7	55.36
Bra012301.1-P	Field mustard	nucleus	37.32	51.5
Bra031356.1-P	Field mustard	nucleus	37.68	48.6
CDY00411	Canola	nucleus	38.41	46.09
CDY01304	Canola	nucleus	38.41	45.89
AT1G21970.1	Thale cress	nucleus	39.13	45.38
OQU87808	Sorghum	nucleus	24.64	41.21
OQU78466	Sorghum	nucleus	19.93	40.15
KXG22176	Sorghum	nucleus	26.09	40.0
EER99684	Sorghum	nucleus	29.35	37.16
EER94693	Sorghum	nucleus	29.71	36.44
EES04176	Sorghum	nucleus	23.55	35.71
OQU88166	Sorghum	cytosol, mitochondrion, nucleus	18.84	35.62
CDY68650	Canola	nucleus	37.68	34.67
OQU76250	Sorghum	nucleus	31.88	33.72
CDY30639	Canola	nucleus	38.41	30.99
EES14637	Sorghum	nucleus	28.99	29.09
EES05602	Sorghum	nucleus	18.48	25.89
EER89161	Sorghum	cytosol, mitochondrion, nucleus	17.75	25.0
EES13767	Sorghum	nucleus	15.58	14.48

Protein Annotations

Gene3D:1.10.20.10	MapMan:15.5.51.2	UniProt:A0A194YRJ0	InterPro:CBFA_NFYB_domain	GO:GO:0000003	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006355	GO:GO:0006629	GO:GO:0007154
GO:GO:0007165	GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009628
GO:GO:0009719	GO:GO:0009738	GO:GO:0009785	GO:GO:0009790	GO:GO:0009791	GO:GO:0009793
GO:GO:0009987	GO:GO:0010262	GO:GO:0043565	GO:GO:0045723	GO:GO:0045893	GO:GO:0046982
InterPro:Histone-fold	InterPro:IPR009072	EnsemblPlants:KXG30848	ProteinID:KXG30848	ProteinID:KXG30848.1	PFAM:PF00808
PRINTS:PR00615	ScanProsite:PS00685	PANTHER:PTHR11064	PANTHER:PTHR11064:SF20	EnsemblPlantsGene:SORBI_3004G254500	SUPFAM:SSF47113
InterPro:Transcrpt_fac_NFYB/HAP3_CS	UniParc:UPI0007F2A954	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr4:+:60098944..60099774

Molecular Weight (calculated)

29164.9 Da

IEP (calculated)

6.882

GRAVY (calculated)

-0.601

Length

276 amino acids

Sequence
(BLAST)

001: MDSSFLPAGA ESGSVVSGGA NNGAAAQQQA PPLIREQDRL MPIANVIRIM RRVLPAHAKI SDDAKETIQE CVSEYISFIT GEANERCQRE QRKTITAEDV
101: LWAMSRLGFD DYVEPLSVYL HRYRDFEGEA RGVGLAPGAA PSRGGDHHHH HPLKSRGPGG GSGAAMLPHH HHHHDMQMHA AMYGGTVPPA PGPPHHGHGH
201: GFLMPHPQGG SHYLPYPYEP TYGGEHAMAA YYGGAAAYAP GNGGGSGDGS GSSGGSASHT PQGSGGFEHP HPFAYK

Best Arabidopsis Sequence Match ( AT5G47670.2 )
(BLAST)

001: MAEGSMRPPE FNQPNKTSNG GEEECTVREQ DRFMPIANVI RIMRRILPAH AKISDDSKET IQECVSEYIS FITGEANERC QREQRKTITA EDVLWAMSKL
101: GFDDYIEPLT LYLHRYRELE GERGVSCSAG SVSMTNGLVV KRPNGTMTEY GAYGPVPGIH MAQYHYRHQN GFVFSGNEPN SKMSGSSSGA SGARVEVFPT
201: QQHKY

Arabidopsis Description

NFYB6Nuclear transcription factor Y subunit B-6 [Source:UniProtKB/Swiss-Prot;Acc:Q84W66]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.