Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 4
- plastid 1
- cytosol 1
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G09030.1 | EER96962 | AT3G59220.1 | 17322342 |
| AT1G09030.1 | EES14882 | AT3G59220.1 | 17322342 |
| AT1G09030.1 | OQU90634 | AT3G59220.1 | 17322342 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d042197_P001 | Maize | plastid | 91.1 | 80.12 |
| GSMUA_Achr8P21910_001 | Banana | cytosol | 44.52 | 55.08 |
| TraesCS3A01G457000.1 | Wheat | cytosol, mitochondrion, nucleus, plastid | 63.7 | 54.07 |
| TraesCS3D01G450000.1 | Wheat | cytosol, mitochondrion, nucleus, plastid | 62.33 | 52.91 |
| HORVU3Hr1G098490.1 | Barley | cytosol, mitochondrion, nucleus, plastid | 62.33 | 52.91 |
| Bra018585.1-P | Field mustard | nucleus | 41.78 | 46.21 |
| CDX95014 | Canola | nucleus | 41.78 | 46.21 |
| AT1G09030.1 | Thale cress | nucleus | 42.47 | 44.6 |
| PGSC0003DMT400063671 | Potato | nucleus | 40.41 | 42.75 |
| KRG92877 | Soybean | nucleus | 40.41 | 42.75 |
| VIT_14s0060g02660.t01 | Wine grape | nucleus | 42.47 | 42.18 |
| KRH33913 | Soybean | nucleus | 39.73 | 41.13 |
| Solyc01g099320.2.1 | Tomato | nucleus | 41.1 | 41.1 |
| VIT_01s0010g01910.t01 | Wine grape | cytosol | 41.78 | 40.13 |
| VIT_01s0010g01940.t01 | Wine grape | cytosol | 41.1 | 39.47 |
| OQU78466 | Sorghum | nucleus | 33.56 | 35.77 |
| EES04176 | Sorghum | nucleus | 42.47 | 34.07 |
| OQU87808 | Sorghum | nucleus | 36.99 | 32.73 |
| KXG22176 | Sorghum | nucleus | 37.67 | 30.56 |
| EER94693 | Sorghum | nucleus | 42.47 | 27.56 |
| EER99684 | Sorghum | nucleus | 41.1 | 27.52 |
| EES14637 | Sorghum | nucleus | 42.47 | 22.55 |
| EES05602 | Sorghum | nucleus | 28.08 | 20.81 |
| OQU76250 | Sorghum | nucleus | 35.62 | 19.92 |
| KXG30848 | Sorghum | nucleus | 35.62 | 18.84 |
| EER89161 | Sorghum | cytosol, mitochondrion, nucleus | 24.66 | 18.37 |
| EES13767 | Sorghum | nucleus | 19.86 | 9.76 |
Protein Annotations
| Gene3D:1.10.20.10 | MapMan:15.5.51.2 | EntrezGene:8062277 | UniProt:A0A1W0W1A6 | InterPro:CBFA_NFYB_domain | GO:GO:0003674 |
| GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| GO:GO:0046982 | InterPro:Histone-fold | InterPro:IPR009072 | EnsemblPlants:OQU88166 | ProteinID:OQU88166 | ProteinID:OQU88166.1 |
| PFAM:PF00808 | PRINTS:PR00615 | PANTHER:PTHR11064 | PANTHER:PTHR11064:SF54 | EnsemblPlantsGene:SORBI_3003G417700 | SUPFAM:SSF47113 |
| UniParc:UPI0001A856A5 | RefSeq:XP_002459054.1 | : | : | : | : |
Description
hypothetical protein
Coordinates
chr3:-:72346258..72347141
Molecular Weight (calculated)
16216.0 Da
IEP (calculated)
7.561
GRAVY (calculated)
-0.813
Length
146 amino acids
Sequence
(BLAST)
(BLAST)
001: MASSSTTQDA NNGVRHDNNL LPIANVGRIM KDALPPQAKI SKHAKETIQE CATEFVGFVT GEASERCRRE RRKTINGDDI CHAMRSLGLD HYADSMHRYL
101: QRYRETEELA ATLNNGGGGR DGRAIQIDVR AELSIFKGSN QQDGRD
101: QRYRETEELA ATLNNGGGGR DGRAIQIDVR AELSIFKGSN QQDGRD
001: MTDEDRLLPI ANVGRLMKQI LPSNAKISKE AKQTVQECAT EFISFVTCEA SEKCHRENRK TVNGDDIWWA LSTLGLDNYA DAVGRHLHKY REAERERTEH
101: NKGSNDSGNE KETNTRSDVQ NQSTKFIRVV EKGSSSSAR
101: NKGSNDSGNE KETNTRSDVQ NQSTKFIRVV EKGSSSSAR
Arabidopsis Description
NFYB4Nuclear transcription factor Y subunit B-4 [Source:UniProtKB/Swiss-Prot;Acc:O04027]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.