Factsheet for Bra018585.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	mitochondrion
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra007437.1-P
Bra014547.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G09030.1	Bra007437.1-P	AT3G59220.1	17322342
AT1G09030.1	Bra014547.1-P	AT3G59220.1	17322342

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX95014	Canola	nucleus	99.24	99.24
AT1G09030.1	Thale cress	nucleus	88.64	84.17
VIT_14s0060g02660.t01	Wine grape	nucleus	66.67	59.86
KRH33913	Soybean	nucleus	60.61	56.74
KRG92877	Soybean	nucleus	59.09	56.52
Solyc01g099320.2.1	Tomato	nucleus	61.36	55.48
PGSC0003DMT400063671	Potato	nucleus	57.58	55.07
VIT_01s0010g01910.t01	Wine grape	cytosol	58.33	50.66
VIT_01s0010g01940.t01	Wine grape	cytosol	56.82	49.34
GSMUA_Achr8P21910_001	Banana	cytosol	40.91	45.76
Bra000462.1-P	Field mustard	nucleus	53.79	45.51
Bra021147.1-P	Field mustard	nucleus	52.27	43.95
Bra004428.1-P	Field mustard	nucleus	49.24	41.94
OQU88166	Sorghum	cytosol, mitochondrion, nucleus	46.21	41.78
Bra005074.1-P	Field mustard	nucleus	44.7	41.55
Bra027199.1-P	Field mustard	nucleus	52.27	40.59
TraesCS3D01G450000.1	Wheat	cytosol, mitochondrion, nucleus, plastid	49.24	37.79
TraesCS3A01G457000.1	Wheat	cytosol, mitochondrion, nucleus, plastid	49.24	37.79
HORVU3Hr1G098490.1	Barley	cytosol, mitochondrion, nucleus, plastid	49.24	37.79
Zm00001d042197_P001	Maize	plastid	46.97	37.35
Bra001615.1-P	Field mustard	nucleus	52.27	36.51
Bra017473.1-P	Field mustard	nucleus	48.48	34.78
Bra022147.1-P	Field mustard	nucleus	48.48	34.41
Bra006991.1-P	Field mustard	nucleus	44.7	33.15
Bra037211.1-P	Field mustard	nucleus	51.52	32.69
Bra013143.1-P	Field mustard	nucleus	51.52	32.54
Bra023095.1-P	Field mustard	nucleus	46.97	31.0
Bra017209.1-P	Field mustard	nucleus	44.7	30.89
Bra012301.1-P	Field mustard	nucleus	40.91	27.0
Bra017471.1-P	Field mustard	nucleus	42.42	26.79
Bra031356.1-P	Field mustard	nucleus	40.15	24.77
Bra024924.1-P	Field mustard	nucleus	41.67	23.81
Bra016397.1-P	Field mustard	cytosol	34.09	23.44
Bra005976.1-P	Field mustard	cytosol, nucleus, plastid	22.73	19.61
Bra035959.1-P	Field mustard	cytosol, nucleus, plastid	24.24	19.05
Bra009328.1-P	Field mustard	cytosol, nucleus, plastid	23.48	18.67
Bra028668.1-P	Field mustard	nucleus	16.67	11.46

Protein Annotations

Gene3D:1.10.20.10	MapMan:15.5.51.2	EnsemblPlantsGene:Bra018585	EnsemblPlants:Bra018585.1	EnsemblPlants:Bra018585.1-P	InterPro:CBFA_NFYB_domain
ncoils:Coil	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006355
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0043565	GO:GO:0046982
InterPro:Histone-fold	InterPro:IPR009072	UniProt:M4DPZ4	PFAM:PF00808	PRINTS:PR00615	ScanProsite:PS00685
PANTHER:PTHR11064	PANTHER:PTHR11064:SF88	SUPFAM:SSF47113	InterPro:Transcrpt_fac_NFYB/HAP3_CS	UniParc:UPI000253E81F	SEG:seg

Description

AT1G09030 (E=1e-054) NF-YB4 | NF-YB4 (NUCLEAR FACTOR Y, SUBUNIT B4); transcription factor

Coordinates

chrA06:-:3114851..3115249

Molecular Weight (calculated)

14842.2 Da

IEP (calculated)

6.524

GRAVY (calculated)

-0.872

Length

132 amino acids

Sequence
(BLAST)

001: MADEDRLLPI ANVGRLMKQI LPSNAKISKE AKQTVQECAT EFISFVTCEA SDKCHRENRK TVNGDDIWWA LSTLGLDNYA DAVGRYLHKY REAERERAEN
101: NKSSNDSGNE REPNITSGYS RVLEKGSSSS AR

Best Arabidopsis Sequence Match ( AT1G09030.1 )
(BLAST)

001: MTDEDRLLPI ANVGRLMKQI LPSNAKISKE AKQTVQECAT EFISFVTCEA SEKCHRENRK TVNGDDIWWA LSTLGLDNYA DAVGRHLHKY REAERERTEH
101: NKGSNDSGNE KETNTRSDVQ NQSTKFIRVV EKGSSSSAR

Arabidopsis Description

NFYB4Nuclear transcription factor Y subunit B-4 [Source:UniProtKB/Swiss-Prot;Acc:O04027]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.