Factsheet for Bra005976.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus, cytosol

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra009328.1-P	Field mustard	cytosol, nucleus, plastid	93.46	86.14
AT5G08190.1	Thale cress	cytosol, nucleus, plastid	90.2	84.66
KRH56716	Soybean	cytosol, mitochondrion, nucleus	81.7	79.62
KRH03842	Soybean	cytosol, mitochondrion, nucleus	82.35	78.75
Bra035959.1-P	Field mustard	cytosol, nucleus, plastid	86.27	78.57
PGSC0003DMT400010436	Potato	cytosol, mitochondrion, nucleus	79.74	77.22
VIT_17s0000g04350.t01	Wine grape	cytosol, mitochondrion, nucleus	77.78	76.77
KRH54787	Soybean	cytosol, mitochondrion, nucleus	77.12	75.64
PGSC0003DMT400059368	Potato	cytosol	75.16	74.19
Solyc06g069310.2.1	Tomato	cytosol, mitochondrion, nucleus	63.4	74.05
PGSC0003DMT400063256	Potato	cytosol, nucleus, plastid	76.47	73.58
GSMUA_Achr1P20700_001	Banana	cytosol	25.49	73.58
KRH62965	Soybean	cytosol, nucleus	50.98	72.9
Solyc03g114400.2.1	Tomato	cytosol, nucleus, plastid	59.48	68.94
GSMUA_Achr1P20710_001	Banana	endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, vacuole	52.29	67.8
GSMUA_Achr9P00790_001	Banana	cytosol, nucleus, peroxisome	69.93	61.85
Bra028668.1-P	Field mustard	nucleus	58.82	46.88
Zm00001d050242_P002	Maize	plastid	71.9	37.04
EES13767	Sorghum	nucleus	71.9	37.04
Zm00001d032328_P005	Maize	extracellular, plastid	71.9	36.54
TraesCS3A01G450700.1	Wheat	cytosol, mitochondrion, nucleus	69.28	36.43
TraesCS3B01G487800.1	Wheat	cytosol, mitochondrion, nucleus	69.28	35.81
TraesCS3D01G443500.1	Wheat	cytosol, mitochondrion, nucleus	69.28	35.57
HORVU3Hr1G097680.4	Barley	cytosol, mitochondrion, nucleus	67.32	33.55
Bra005074.1-P	Field mustard	nucleus	24.18	26.06
Bra018585.1-P	Field mustard	nucleus	19.61	22.73
Bra021147.1-P	Field mustard	nucleus	21.57	21.02
Os08t0383700-02	Rice	cytosol, extracellular	33.33	20.56
Bra022147.1-P	Field mustard	nucleus	24.84	20.43
Bra017473.1-P	Field mustard	nucleus	24.18	20.11
Bra027199.1-P	Field mustard	nucleus	22.22	20.0
Bra006991.1-P	Field mustard	nucleus	22.88	19.66
Bra017209.1-P	Field mustard	nucleus	24.18	19.37
Bra000462.1-P	Field mustard	nucleus	19.61	19.23
Bra001615.1-P	Field mustard	nucleus	23.53	19.05
Bra023095.1-P	Field mustard	nucleus	24.18	18.5
Bra004428.1-P	Field mustard	nucleus	18.3	18.06
Bra017471.1-P	Field mustard	nucleus	22.22	16.27
Bra013143.1-P	Field mustard	nucleus	22.22	16.27
Bra012301.1-P	Field mustard	nucleus	19.61	15.0
Bra037211.1-P	Field mustard	nucleus	20.26	14.9
Bra024924.1-P	Field mustard	nucleus	22.22	14.72
Bra031356.1-P	Field mustard	nucleus	20.26	14.49
Bra016397.1-P	Field mustard	cytosol	17.65	14.06

Protein Annotations

EnsemblPlants:Bra005976.1	EnsemblPlants:Bra005976.1-P	EnsemblPlantsGene:Bra005976	Gene3D:1.10.20.10	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0046982
InterPro:CBFA_NFYB_domain	InterPro:Histone-fold	InterPro:IPR009072	PANTHER:PTHR11064	PANTHER:PTHR11064:SF8	PFAM:PF00808
SEG:seg	SUPFAM:SSF47113	UniParc:UPI000253F741	UniProt:M4CP38	MapMan:15.3.5.7.1.2	:

Description

AT5G08190 (E=5e-061) NF-YB12 | NF-YB12 (NUCLEAR FACTOR Y, SUBUNIT B12); DNA binding / transcription factor

Coordinates

chrA03:+:1469993..1470773

Molecular Weight (calculated)

17211.3 Da

IEP (calculated)

4.492

GRAVY (calculated)

-0.627

Length

153 amino acids

Sequence
(BLAST)

001: MDPMDIVGKS KEDASLPKAT MTKIIKENVR VARDAQDLLI ECCVEFINLI SSESNEVCNK ENKRTIAPEH VLKELQVLGF GEYGEEVYAA YEQHRYETIQ
101: DSQRSVKMNT GAYMTEEEAA AEQQRMFAEA RARMNGGVSA PQQLDTQQSS LQS

Best Arabidopsis Sequence Match ( AT5G23090.1 )
(BLAST)

001: MDPMDIVGKS KEDASLPKAT MTKIIKEMLP PDVRVARDAQ DLLIECCVEF INLVSSESND VCNKEDKRTI APEHVLKALQ VLGFGEYIEE VYAAYEQHKY
101: ETMQDTQRSV KWNPGAQMTE EEAAAEQQRM FAEARARMNG GVSVPQPEHP ETDQRSPQS

Arabidopsis Description

DR1AT5G23090 protein [Source:UniProtKB/TrEMBL;Acc:B9DHA9]
SUBAcon: [plastid,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.