Factsheet for Zm00001d050242_P002

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

cytosol 2
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, mitochondrion, nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

plastid: 22065420

msms PMID: 22065420 doi

W Majeran, G Friso, Y Asakura, X Qu, M Huang, L Ponnala, KP Watkins, A Barkan, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, USA.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr1P20700_001	Banana	cytosol	15.82	88.68
Zm00001d032328_P005	Maize	extracellular, plastid	84.18	83.06
EES13767	Sorghum	nucleus	82.83	82.83
VIT_17s0000g04350.t01	Wine grape	cytosol, mitochondrion, nucleus	40.74	78.06
KRH56716	Soybean	cytosol, mitochondrion, nucleus	40.07	75.8
KRH54787	Soybean	cytosol, mitochondrion, nucleus	39.39	75.0
KRH03842	Soybean	cytosol, mitochondrion, nucleus	40.4	75.0
PGSC0003DMT400010436	Potato	cytosol, mitochondrion, nucleus	39.73	74.68
GSMUA_Achr1P20710_001	Banana	endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, vacuole	28.96	72.88
GSMUA_Achr9P00790_001	Banana	cytosol, nucleus, peroxisome	42.42	72.83
Bra005976.1-P	Field mustard	cytosol, nucleus, plastid	37.04	71.9
AT5G23090.1	Thale cress	cytosol, nucleus, plastid	38.38	71.7
PGSC0003DMT400063256	Potato	cytosol, nucleus, plastid	38.38	71.7
PGSC0003DMT400059368	Potato	cytosol	37.37	71.61
AT5G08190.1	Thale cress	cytosol, nucleus, plastid	39.06	71.17
Bra035959.1-P	Field mustard	cytosol, nucleus, plastid	39.73	70.24
KRH62965	Soybean	cytosol, nucleus	25.25	70.09
CDY16839	Canola	cytosol, nucleus, plastid	39.73	69.82
CDX87185	Canola	cytosol, nucleus, plastid	39.73	69.82
CDX69967	Canola	cytosol, nucleus, plastid	38.72	69.7
CDY21520	Canola	cytosol, nucleus, plastid	38.72	69.28
Bra009328.1-P	Field mustard	cytosol, nucleus, plastid	38.72	69.28
TraesCS3A01G450700.1	Wheat	cytosol, mitochondrion, nucleus	58.25	59.45
TraesCS3B01G487800.1	Wheat	cytosol, mitochondrion, nucleus	58.92	59.12
TraesCS3D01G443500.1	Wheat	cytosol, mitochondrion, nucleus	58.59	58.39
HORVU3Hr1G097680.4	Barley	cytosol, mitochondrion, nucleus	58.25	56.35
Solyc12g038390.1.1	Tomato	cytosol	15.49	56.1
Os08t0383700-02	Rice	cytosol, extracellular	44.78	53.63
CDY44761	Canola	cytosol	39.39	48.75
CDY40760	Canola	nucleus	37.04	44.35
Bra028668.1-P	Field mustard	nucleus	25.59	39.58
Zm00001d001775_P001	Maize	nucleus	8.42	27.47
Zm00001d009636_P001	Maize	nucleus	10.77	24.81
Zm00001d039957_P001	Maize	nucleus	11.45	24.64
Zm00001d042968_P002	Maize	extracellular, nucleus	15.49	24.21
Zm00001d030151_P001	Maize	mitochondrion	6.4	23.17
Zm00001d010574_P001	Maize	nucleus	13.8	21.93
Zm00001d038397_P005	Maize	nucleus	12.79	21.35
Zm00001d042196_P001	Maize	nucleus	12.12	20.11
Zm00001d006813_P001	Maize	nucleus	13.47	19.51
Zm00001d022099_P001	Maize	nucleus	13.8	19.34
Zm00001d011915_P001	Maize	nucleus	10.77	18.71
Zm00001d029505_P001	Maize	nucleus	13.8	18.47
Zm00001d019101_P001	Maize	nucleus	12.12	18.27
Zm00001d042197_P001	Maize	plastid	10.1	18.07
Zm00001d017899_P001	Maize	nucleus	10.77	16.24
Zm00001d051697_P001	Maize	nucleus	14.14	15.91
Zm00001d017898_P001	Maize	nucleus	14.81	15.83
Zm00001d045772_P001	Maize	nucleus, plastid	13.47	15.27
Zm00001d049485_P001	Maize	nucleus	13.13	15.06
Zm00001d012445_P001	Maize	nucleus	17.17	9.66

Protein Annotations

Gene3D:1.10.20.10	EntrezGene:100191260	MapMan:15.3.5.7.1.2	ProteinID:AQK52171.1	UniProt:B4F864	EMBL:BT033302
InterPro:CBFA_NFYB_domain	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0046982	InterPro:Histone-fold	InterPro:IPR009072	EMBL:KJ728288
PFAM:PF00808	PANTHER:PTHR11064	PANTHER:PTHR11064:SF8	SUPFAM:SSF47113	UniParc:UPI00017B6388	EnsemblPlantsGene:Zm00001d050242
EnsemblPlants:Zm00001d050242_P002	EnsemblPlants:Zm00001d050242_T002	SEG:seg	:	:	:

Description

CCAAT-DR1-transcription factor 3Protein Dr1 homolog

Coordinates

chr4:+:75567139..75573713

Molecular Weight (calculated)

33653.8 Da

IEP (calculated)

5.169

GRAVY (calculated)

-0.876

Length

297 amino acids

Sequence
(BLAST)

001: MDPMDIVGKS KEDVSLPKST MVKIIKEMLP PDVRVARDAQ DLLVECCVEF INLLSSESNE VCSREEKKTI APEHVIKALS DLGFREYIEE VYAAYEQHKL
101: ETLDSPKAGK FTRIEMTEEE AVAEQQRMFA EARARMNNGA PKPKEPEQEP PQLPQAQPQL QLHTEPQQPM QSQVQLHSQT QHYLQPQLQL HHQPQQLPQV
201: QLHSQPQLQP QVHLHPQPQL PPQLQVHQQL QQPPQVQVHQ QPEVQPQEAQ LQSSAQQTSQ PQPQAQLQSQ GHSQAQLQAG LLGQLQTQAQ TGPDMDS

Best Arabidopsis Sequence Match ( AT5G23090.4 )
(BLAST)

001: MDPMDIVGKS KEDASLPKAT MTKIIKEMLP PDVRVARDAQ DLLIECCVEF INLVSSESND VCNKEDKRTI APEHVLKALQ VLGFGEYIEE VYAAYEQHKY
101: ETMDTQRSVK WNPGAQMTEE EAAAEQQRMF AEARARMNGG VSVPQPEHPE TDQRSPQS

Arabidopsis Description

DR1AT5G23090 protein [Source:UniProtKB/TrEMBL;Acc:B9DHA9]
SUBAcon: [plastid,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.