Factsheet for Zm00001d017899_P001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

cytosol 1
mitochondrion 1
nucleus 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES05602	Sorghum	nucleus	74.11	74.11
TraesCS6B01G316700.1	Wheat	cytosol, nucleus, plastid	42.13	50.92
TraesCS6D01G268100.1	Wheat	cytosol, nucleus, plastid	41.62	50.31
TraesCS6A01G287400.2	Wheat	cytosol, mitochondrion, nucleus, plastid	41.62	47.95
Os02t0725900-01	Rice	nucleus	41.12	43.55
HORVU6Hr1G072140.1	Barley	cytosol	33.5	40.49
Zm00001d001775_P001	Maize	nucleus	13.71	29.67
Zm00001d009636_P001	Maize	nucleus	18.78	28.68
Zm00001d011915_P001	Maize	nucleus	23.35	26.9
Zm00001d030151_P001	Maize	mitochondrion	11.17	26.83
Zm00001d039957_P001	Maize	nucleus	18.78	26.81
Zm00001d042197_P001	Maize	plastid	20.81	24.7
Zm00001d042196_P001	Maize	nucleus	22.34	24.58
Zm00001d038397_P005	Maize	nucleus	20.3	22.47
Zm00001d010574_P001	Maize	nucleus	19.8	20.86
Zm00001d019101_P001	Maize	nucleus	20.81	20.81
Zm00001d042968_P002	Maize	extracellular, nucleus	19.29	20.0
Bra016397.1-P	Field mustard	cytosol	19.29	19.79
Zm00001d006813_P001	Maize	nucleus	20.3	19.51
Zm00001d022099_P001	Maize	nucleus	20.81	19.34
Zm00001d051697_P001	Maize	nucleus	25.38	18.94
Zm00001d017898_P001	Maize	nucleus	25.38	17.99
Zm00001d049485_P001	Maize	nucleus	23.35	17.76
Zm00001d029505_P001	Maize	nucleus	19.29	17.12
Zm00001d045772_P001	Maize	nucleus, plastid	21.32	16.03
CDY38832	Canola	nucleus	17.77	15.28
Zm00001d050242_P002	Maize	plastid	16.24	10.77
Zm00001d032328_P005	Maize	extracellular, plastid	15.74	10.3
Zm00001d012445_P001	Maize	nucleus	20.3	7.58

Protein Annotations

Gene3D:1.10.20.10	MapMan:15.5.51.2	UniProt:A0A1D6HJ17	ProteinID:AQK74482.1	InterPro:CBFA_NFYB_domain	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0046982	InterPro:Histone-fold	InterPro:IPR009072	PFAM:PF00808	PRINTS:PR00615	PANTHER:PTHR11064
PANTHER:PTHR11064:SF38	SUPFAM:SSF47113	UniParc:UPI0004DEB2D8	EnsemblPlantsGene:Zm00001d017899	EnsemblPlants:Zm00001d017899_P001	EnsemblPlants:Zm00001d017899_T001
SEG:seg	:	:	:	:	:

Description

Nuclear transcription factor Y subunit B-6

Coordinates

chr5:-:209742538..209743296

Molecular Weight (calculated)

20982.4 Da

IEP (calculated)

8.815

GRAVY (calculated)

-0.695

Length

197 amino acids

Sequence
(BLAST)

001: MGRKAKRCAG KKDDGREEKV AAAPAAEGAS SSSSDGEGAG TAATGLPMAN LVRLMRQVIP KGVKISSRAK DLTHDCAVEF VGFLAGEASE LARAQHRRTI
101: SPEDFTRSLQ ALGFDDYVRP MSTYISRYRE QATSPAGYSG GFARRPPPRA TAAPCVSDEE TRSRVPPHGE HGDGWRTSVN TPAPGGHGYD YTSPDNM

Best Arabidopsis Sequence Match ( AT5G47670.2 )
(BLAST)

001: MAEGSMRPPE FNQPNKTSNG GEEECTVREQ DRFMPIANVI RIMRRILPAH AKISDDSKET IQECVSEYIS FITGEANERC QREQRKTITA EDVLWAMSKL
101: GFDDYIEPLT LYLHRYRELE GERGVSCSAG SVSMTNGLVV KRPNGTMTEY GAYGPVPGIH MAQYHYRHQN GFVFSGNEPN SKMSGSSSGA SGARVEVFPT
201: QQHKY

Arabidopsis Description

NFYB6Nuclear transcription factor Y subunit B-6 [Source:UniProtKB/Swiss-Prot;Acc:Q84W66]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.