Factsheet for Zm00001d051697_P001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 1
nucleus 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, plastid
iPSORT:	plastid
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KXG30848	Sorghum	nucleus	87.5	83.7
Zm00001d017898_P001	Maize	nucleus	84.47	80.22
TraesCS6A01G287300.1	Wheat	nucleus	64.02	68.7
TraesCS6D01G268000.1	Wheat	nucleus	63.64	68.29
HORVU6Hr1G072110.1	Barley	nucleus	62.5	68.18
TraesCS6B01G316600.1	Wheat	nucleus	63.26	67.89
Os02t0725700-01	Rice	nucleus	63.26	65.75
KRG89094	Soybean	cytosol	35.23	55.36
KRH66068	Soybean	nucleus	36.36	55.17
Bra012301.1-P	Field mustard	nucleus	39.39	52.0
Bra031356.1-P	Field mustard	nucleus	39.77	49.07
Zm00001d001775_P001	Maize	nucleus	16.67	48.35
CDY00411	Canola	nucleus	40.53	46.52
CDY01304	Canola	nucleus	40.53	46.32
AT1G21970.1	Thale cress	nucleus	40.91	45.38
Zm00001d009636_P001	Maize	nucleus	21.59	44.19
Zm00001d039957_P001	Maize	nucleus	21.59	41.3
Zm00001d038397_P005	Maize	nucleus	27.27	40.45
Zm00001d006813_P001	Maize	nucleus	30.3	39.02
Zm00001d022099_P001	Maize	nucleus	31.06	38.68
Zm00001d011915_P001	Maize	nucleus	25.0	38.6
Zm00001d042196_P001	Maize	nucleus	25.76	37.99
Zm00001d010574_P001	Maize	nucleus	26.89	37.97
Zm00001d029505_P001	Maize	nucleus	31.06	36.94
Zm00001d042968_P002	Maize	extracellular, nucleus	25.76	35.79
Zm00001d045772_P001	Maize	nucleus, plastid	35.23	35.5
CDY68650	Canola	nucleus	39.77	35.0
Zm00001d030151_P001	Maize	mitochondrion	10.23	32.93
Zm00001d042197_P001	Maize	plastid	20.08	31.93
CDY30639	Canola	nucleus	40.53	31.29
Zm00001d049485_P001	Maize	nucleus	30.68	31.27
Zm00001d017899_P001	Maize	nucleus	18.94	25.38
Zm00001d019101_P001	Maize	nucleus	17.42	23.35
Zm00001d050242_P002	Maize	plastid	15.91	14.14
Zm00001d032328_P005	Maize	extracellular, plastid	15.15	13.29
Zm00001d012445_P001	Maize	nucleus	26.52	13.26

Protein Annotations

Gene3D:1.10.20.10	EntrezGene:103654015	MapMan:15.5.51.2	ProteinID:AQK55007.1	InterPro:CBFA_NFYB_domain	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0043565	GO:GO:0046982	InterPro:Histone-fold	InterPro:IPR009072
UniProt:K7UZ84	PFAM:PF00808	PRINTS:PR00615	ScanProsite:PS00685	PANTHER:PTHR11064	PANTHER:PTHR11064:SF20
SUPFAM:SSF47113	InterPro:Transcrpt_fac_NFYB/HAP3_CS	UniParc:UPI000160B021	EnsemblPlantsGene:Zm00001d051697	EnsemblPlants:Zm00001d051697_P001	EnsemblPlants:Zm00001d051697_T001
SEG:seg	:	:	:	:	:

Description

CCAAT-DR1-transcription factor 7Nuclear transcription factor Y subunit B-6

Coordinates

chr4:-:167044925..167045719

Molecular Weight (calculated)

28099.7 Da

IEP (calculated)

6.829

GRAVY (calculated)

-0.633

Length

264 amino acids

Sequence
(BLAST)

001: MDSSFLPAGA DNGSAGGANN GGGAAQQAPP IREQDRLMPI ANVIRIMRRV LPAHAKISDD AKETIQECVS EYISFITGEA NERCQREQRK TITAEDVLWA
101: MSRLGFDDYV EPLSVYLHRY REFEGEARGV GLAPAPPRGD HHHHHHSVPP SMLNKSRGPG SGAVMLPHHH HHDMHASMYG GAVPPPPHHG FLMPHPQGGH
201: YLPYPYEPTS YGGEHALASG YYGGAAYAPG NNGGSGDGSG GSASHAPPGG SGGGFDHPHT FAYK

Best Arabidopsis Sequence Match ( AT5G47670.2 )
(BLAST)

001: MAEGSMRPPE FNQPNKTSNG GEEECTVREQ DRFMPIANVI RIMRRILPAH AKISDDSKET IQECVSEYIS FITGEANERC QREQRKTITA EDVLWAMSKL
101: GFDDYIEPLT LYLHRYRELE GERGVSCSAG SVSMTNGLVV KRPNGTMTEY GAYGPVPGIH MAQYHYRHQN GFVFSGNEPN SKMSGSSSGA SGARVEVFPT
201: QQHKY

Arabidopsis Description

NFYB6Nuclear transcription factor Y subunit B-6 [Source:UniProtKB/Swiss-Prot;Acc:Q84W66]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.