Factsheet for TraesCS6A01G287300.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 1
nucleus 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, plastid
iPSORT:	plastid
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6D01G268000.1	Wheat	nucleus	99.19	99.19
TraesCS6B01G316600.1	Wheat	nucleus	98.37	98.37
HORVU6Hr1G072110.1	Barley	nucleus	93.5	95.04
Os02t0725700-01	Rice	nucleus	74.8	72.44
Zm00001d051697_P001	Maize	nucleus	68.7	64.02
Zm00001d017898_P001	Maize	nucleus	71.14	62.95
KXG30848	Sorghum	nucleus	70.33	62.68
KRG89094	Soybean	cytosol	36.59	53.57
KRH66068	Soybean	nucleus	36.99	52.3
Bra012301.1-P	Field mustard	nucleus	39.84	49.0
Bra031356.1-P	Field mustard	nucleus	42.28	48.6
TraesCS1A01G411700.1	Wheat	nucleus	24.39	44.12
CDY01304	Canola	nucleus	40.65	43.29
CDY00411	Canola	nucleus	40.24	43.04
TraesCS7A01G214800.1	Wheat	cytosol	34.55	41.06
AT1G21970.1	Thale cress	nucleus	39.43	40.76
TraesCS3A01G352900.1	Wheat	nucleus	26.42	39.88
TraesCS7A01G486400.1	Wheat	cytosol	17.07	39.62
TraesCS3A01G026900.1	Wheat	nucleus	32.52	39.6
TraesCS1A01G288500.3	Wheat	nucleus	28.46	38.46
TraesCS7A01G214600.1	Wheat	nucleus	41.46	38.35
TraesCS7A01G214700.1	Wheat	nucleus	42.28	37.96
TraesCS7A01G214900.1	Wheat	nucleus	40.65	37.59
TraesCS2A01G173500.1	Wheat	nucleus	33.74	36.73
TraesCS3A01G457100.1	Wheat	nucleus	27.64	35.79
TraesCS7A01G214500.1	Wheat	nucleus	41.87	34.56
CDY68650	Canola	nucleus	41.87	34.33
TraesCS3A01G457000.1	Wheat	cytosol, mitochondrion, nucleus, plastid	23.17	33.14
CDY30639	Canola	nucleus	42.28	30.41
TraesCS2A01G359400.1	Wheat	nucleus	29.67	29.32
TraesCS6A01G287400.2	Wheat	cytosol, mitochondrion, nucleus, plastid	19.11	27.49
TraesCS3A01G450700.1	Wheat	cytosol, mitochondrion, nucleus	17.07	14.43

Protein Annotations

Gene3D:1.10.20.10	MapMan:15.5.51.2	InterPro:CBFA_NFYB_domain	GO:GO:0000003	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006139	GO:GO:0006355	GO:GO:0006629	GO:GO:0007154	GO:GO:0007165
GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009628	GO:GO:0009719
GO:GO:0009738	GO:GO:0009785	GO:GO:0009790	GO:GO:0009791	GO:GO:0009793	GO:GO:0009987
GO:GO:0010262	GO:GO:0043565	GO:GO:0045723	GO:GO:0045893	GO:GO:0046982	InterPro:Histone-fold
InterPro:IPR009072	PFAM:PF00808	PRINTS:PR00615	ScanProsite:PS00685	PANTHER:PTHR11064	PANTHER:PTHR11064:SF20
SUPFAM:SSF47113	EnsemblPlantsGene:TraesCS6A01G287300	EnsemblPlants:TraesCS6A01G287300.1	InterPro:Transcrpt_fac_NFYB/HAP3_CS	SEG:seg	:

Description

No Description!

Coordinates

chr6A:-:519237661..519238401

Molecular Weight (calculated)

26277.9 Da

IEP (calculated)

6.697

GRAVY (calculated)

-0.672

Length

246 amino acids

Sequence
(BLAST)

001: MDMGFPGAAN GAAAAAAGNG GGGGQAPAVR EQDRLMPIAN VIRIMRRVLP PHAKISDDAK ETIQECVSEY ISFITGEANE RCQREQRKTI TAEDVLWAMS
101: RLGFDDYVEP LSIYLHRFRE FEGEARGAGA GHHHHGMPPM MLKPRGAPGP MVPHGDMQMH AAGMYGGGAM PPHPHHPFHM PPHHGQYPQY EMYGGEHGMA
201: AYYGGPYAPG NGGNNGDGSG SSGNGHGGES TPPGGNFEHH QTFGYK

Best Arabidopsis Sequence Match ( AT5G47670.2 )
(BLAST)

001: MAEGSMRPPE FNQPNKTSNG GEEECTVREQ DRFMPIANVI RIMRRILPAH AKISDDSKET IQECVSEYIS FITGEANERC QREQRKTITA EDVLWAMSKL
101: GFDDYIEPLT LYLHRYRELE GERGVSCSAG SVSMTNGLVV KRPNGTMTEY GAYGPVPGIH MAQYHYRHQN GFVFSGNEPN SKMSGSSSGA SGARVEVFPT
201: QQHKY

Arabidopsis Description

NFYB6Nuclear transcription factor Y subunit B-6 [Source:UniProtKB/Swiss-Prot;Acc:Q84W66]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.