Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 1
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS6D01G268000.1 | Wheat | nucleus | 98.37 | 98.37 |
| TraesCS6A01G287300.1 | Wheat | nucleus | 98.37 | 98.37 |
| HORVU6Hr1G072110.1 | Barley | nucleus | 93.5 | 95.04 |
| Os02t0725700-01 | Rice | nucleus | 74.39 | 72.05 |
| Zm00001d051697_P001 | Maize | nucleus | 67.89 | 63.26 |
| Zm00001d017898_P001 | Maize | nucleus | 70.33 | 62.23 |
| KXG30848 | Sorghum | nucleus | 69.51 | 61.96 |
| KRG89094 | Soybean | cytosol | 36.59 | 53.57 |
| KRH66068 | Soybean | nucleus | 36.99 | 52.3 |
| Bra012301.1-P | Field mustard | nucleus | 39.84 | 49.0 |
| Bra031356.1-P | Field mustard | nucleus | 42.28 | 48.6 |
| TraesCS1B01G442000.1 | Wheat | nucleus | 24.39 | 44.12 |
| CDY01304 | Canola | nucleus | 40.65 | 43.29 |
| CDY00411 | Canola | nucleus | 40.24 | 43.04 |
| AT1G21970.1 | Thale cress | nucleus | 39.43 | 40.76 |
| TraesCS3B01G385600.1 | Wheat | nucleus | 26.42 | 39.88 |
| TraesCS7B01G501400.1 | Wheat | cytoskeleton, cytosol, nucleus | 18.29 | 39.47 |
| TraesCS7B01G121900.1 | Wheat | nucleus | 44.72 | 39.29 |
| TraesCS5B01G454900.1 | Wheat | cytoskeleton, cytosol, nucleus | 19.11 | 38.52 |
| TraesCS1B01G297900.2 | Wheat | nucleus | 28.46 | 38.46 |
| TraesCS3B01G017400.1 | Wheat | nucleus | 32.52 | 37.74 |
| TraesCS2B01G199800.1 | Wheat | nucleus | 34.15 | 37.33 |
| TraesCS7B01G121800.1 | Wheat | nucleus | 43.5 | 35.67 |
| CDY68650 | Canola | nucleus | 41.87 | 34.33 |
| CDY30639 | Canola | nucleus | 42.28 | 30.41 |
| TraesCS2B01G378700.1 | Wheat | nucleus | 30.08 | 29.72 |
| TraesCS6B01G316700.1 | Wheat | cytosol, nucleus, plastid | 19.51 | 29.45 |
| TraesCS3B01G452700.1 | Wheat | cytosol | 14.23 | 27.13 |
| TraesCS3B01G487800.1 | Wheat | cytosol, mitochondrion, nucleus | 16.67 | 13.85 |
Protein Annotations
| Gene3D:1.10.20.10 | MapMan:15.5.51.2 | InterPro:CBFA_NFYB_domain | GO:GO:0000003 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003677 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006355 | GO:GO:0006629 | GO:GO:0007154 | GO:GO:0007165 |
| GO:GO:0007275 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009628 | GO:GO:0009719 |
| GO:GO:0009738 | GO:GO:0009785 | GO:GO:0009790 | GO:GO:0009791 | GO:GO:0009793 | GO:GO:0009987 |
| GO:GO:0010262 | GO:GO:0043565 | GO:GO:0045723 | GO:GO:0045893 | GO:GO:0046982 | InterPro:Histone-fold |
| InterPro:IPR009072 | PFAM:PF00808 | PRINTS:PR00615 | ScanProsite:PS00685 | PANTHER:PTHR11064 | PANTHER:PTHR11064:SF86 |
| SUPFAM:SSF47113 | EnsemblPlantsGene:TraesCS6B01G316600 | EnsemblPlants:TraesCS6B01G316600.1 | InterPro:Transcrpt_fac_NFYB/HAP3_CS | SEG:seg | : |
Description
No Description!
Coordinates
chr6B:-:564313422..564314162
Molecular Weight (calculated)
26324.0 Da
IEP (calculated)
6.697
GRAVY (calculated)
-0.641
Length
246 amino acids
Sequence
(BLAST)
(BLAST)
001: MDMGFPGAAN GAAAAAAGNG SGGGQAPAVR EQDRLMPIAN VIRIMRRVLP PHAKISDDAK ETIQECVSEY ISFITGEANE RCQREQRKTI TAEDVLWAMS
101: RLGFDDYVEP LSIYLHRFRE FEGEARGAGV GHHHHGMPPM MLKPRGAPGP MVPHGDMQMH AAGMYGGGAM PPHPHHPFHM PAHHGQYPQY EMYGGEHGMA
201: AYYGGPYAPG NGGNNGDGSG SSGNGHGGES TPPAGNFEHH QTFGYK
101: RLGFDDYVEP LSIYLHRFRE FEGEARGAGV GHHHHGMPPM MLKPRGAPGP MVPHGDMQMH AAGMYGGGAM PPHPHHPFHM PAHHGQYPQY EMYGGEHGMA
201: AYYGGPYAPG NGGNNGDGSG SSGNGHGGES TPPAGNFEHH QTFGYK
001: MAEGSMRPPE FNQPNKTSNG GEEECTVREQ DRFMPIANVI RIMRRILPAH AKISDDSKET IQECVSEYIS FITGEANERC QREQRKTITA EDVLWAMSKL
101: GFDDYIEPLT LYLHRYRELE GERGVSCSAG SVSMTNGLVV KRPNGTMTEY GAYGPVPGIH MAQYHYRHQN GFVFSGNEPN SKMSGSSSGA SGARVEVFPT
201: QQHKY
101: GFDDYIEPLT LYLHRYRELE GERGVSCSAG SVSMTNGLVV KRPNGTMTEY GAYGPVPGIH MAQYHYRHQN GFVFSGNEPN SKMSGSSSGA SGARVEVFPT
201: QQHKY
Arabidopsis Description
NFYB6Nuclear transcription factor Y subunit B-6 [Source:UniProtKB/Swiss-Prot;Acc:Q84W66]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.