Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G21970.1 | KRG93763 | AT5G15840.1 | 17138697 |
| AT1G21970.1 | KRH01455 | AT5G15840.1 | 17138697 |
| AT1G21970.1 | KRH18308 | AT5G15840.1 | 17138697 |
| AT1G21970.1 | KRH45169 | AT5G15840.1 | 17138697 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH66068 | Soybean | nucleus | 86.9 | 83.91 |
| KRH57816 | Soybean | cytosol | 23.81 | 51.28 |
| KRH50875 | Soybean | nucleus | 36.31 | 50.41 |
| KRH66225 | Soybean | cytosol | 31.55 | 49.07 |
| KRH02238 | Soybean | nucleus | 35.71 | 48.78 |
| KRG88870 | Soybean | cytosol | 30.95 | 48.15 |
| Bra012301.1-P | Field mustard | nucleus | 52.98 | 44.5 |
| KRH37126 | Soybean | nucleus | 30.36 | 43.59 |
| KRH12126 | Soybean | nucleus | 36.9 | 43.06 |
| Bra031356.1-P | Field mustard | nucleus | 54.17 | 42.52 |
| KRH73908 | Soybean | nucleus | 40.48 | 41.21 |
| KRH71548 | Soybean | nucleus | 35.71 | 40.82 |
| KRH51197 | Soybean | nucleus | 53.57 | 40.36 |
| KRH11589 | Soybean | nucleus | 41.07 | 40.35 |
| KRH31905 | Soybean | cytosol, mitochondrion, nucleus | 34.52 | 40.0 |
| KRG95922 | Soybean | nucleus | 38.69 | 39.88 |
| KRH01950 | Soybean | nucleus | 53.57 | 39.82 |
| AT1G21970.1 | Thale cress | nucleus | 55.95 | 39.5 |
| CDY00411 | Canola | nucleus | 53.57 | 39.13 |
| CDY01304 | Canola | nucleus | 53.57 | 38.96 |
| KRH67637 | Soybean | nucleus | 39.29 | 38.6 |
| KRH36605 | Soybean | nucleus | 40.48 | 38.42 |
| KRH17618 | Soybean | plastid | 25.6 | 38.05 |
| KRG92877 | Soybean | nucleus | 30.95 | 37.68 |
| HORVU6Hr1G072110.1 | Barley | nucleus | 54.17 | 37.6 |
| KRH33913 | Soybean | nucleus | 31.55 | 37.59 |
| KRG98494 | Soybean | nucleus | 41.67 | 37.23 |
| KRH32395 | Soybean | nucleus | 35.12 | 36.88 |
| KRH46369 | Soybean | nucleus | 41.67 | 36.65 |
| TraesCS6D01G268000.1 | Wheat | nucleus | 53.57 | 36.59 |
| TraesCS6A01G287300.1 | Wheat | nucleus | 53.57 | 36.59 |
| TraesCS6B01G316600.1 | Wheat | nucleus | 53.57 | 36.59 |
| Os02t0725700-01 | Rice | nucleus | 54.76 | 36.22 |
| KRG92229 | Soybean | nucleus | 36.31 | 35.26 |
| Zm00001d051697_P001 | Maize | nucleus | 55.36 | 35.23 |
| KRH34567 | Soybean | nucleus | 36.31 | 35.06 |
| KXG30848 | Sorghum | nucleus | 55.36 | 33.7 |
| Zm00001d017898_P001 | Maize | nucleus | 55.36 | 33.45 |
| CDY68650 | Canola | nucleus | 54.76 | 30.67 |
| KRH59435 | Soybean | nucleus | 39.29 | 29.33 |
| KRH59594 | Soybean | nucleus | 35.12 | 28.5 |
| KRH43304 | Soybean | nucleus | 39.29 | 27.97 |
| KRH40945 | Soybean | nucleus | 35.12 | 26.7 |
| CDY30639 | Canola | nucleus | 54.17 | 26.61 |
| KRH70381 | Soybean | cytosol | 32.14 | 23.89 |
| KRH54787 | Soybean | cytosol, mitochondrion, nucleus | 20.24 | 21.79 |
| KRH56716 | Soybean | cytosol, mitochondrion, nucleus | 20.24 | 21.66 |
| KRH03842 | Soybean | cytosol, mitochondrion, nucleus | 20.24 | 21.25 |
| KRH62965 | Soybean | cytosol, nucleus | 12.5 | 19.63 |
| KRH49798 | Soybean | cytosol, golgi, nucleus | 26.19 | 19.05 |
Protein Annotations
| Gene3D:1.10.20.10 | MapMan:15.5.51.2 | EntrezGene:547959 | EMBL:ACUP02012184 | InterPro:CBFA_NFYB_domain | EnsemblPlantsGene:GLYMA_20G000600 |
| GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | GO:GO:0046982 | InterPro:Histone-fold | UniProt:I1NCV5 | InterPro:IPR009072 | EnsemblPlants:KRG89094 |
| ProteinID:KRG89094 | ProteinID:KRG89094.1 | PFAM:PF00808 | PRINTS:PR00615 | PANTHER:PTHR11064 | PANTHER:PTHR11064:SF79 |
| SUPFAM:SSF47113 | UniParc:UPI000233D902 | : | : | : | : |
Description
hypothetical protein
Coordinates
chr20:+:50962..52178
Molecular Weight (calculated)
19008.3 Da
IEP (calculated)
5.930
GRAVY (calculated)
-0.537
Length
168 amino acids
Sequence
(BLAST)
(BLAST)
001: MAGVREQDQY MPIANVIRIM RRILPAHAKI SDDAKETIQE CVSEYISFIT AEANERCQRE QRKTVTAEDV LWAMEKLGFD NYAHPLSLYL HRYRESEGEP
101: ASVRRASSAM GINNNMVHPP YINSHGFGMF DFDPSSQGFY RDDHNAASGS GGFVAPFDPY ANIKRDAL
101: ASVRRASSAM GINNNMVHPP YINSHGFGMF DFDPSSQGFY RDDHNAASGS GGFVAPFDPY ANIKRDAL
001: MERGGFHGYR KLSVNNTTPS PPGLAANFLM AEGSMRPPEF NQPNKTSNGG EEECTVREQD RFMPIANVIR IMRRILPAHA KISDDSKETI QECVSEYISF
101: ITGEANERCQ REQRKTITAE DVLWAMSKLG FDDYIEPLTL YLHRYRELEG ERGVSCSAGS VSMTNGLVVK RPNGTMTEYG AYGPVPGIHM AQYHYRHQNG
201: FVFSGNEPNS KMSGSSSGAS GARVEVFPTQ QHKY
101: ITGEANERCQ REQRKTITAE DVLWAMSKLG FDDYIEPLTL YLHRYRELEG ERGVSCSAGS VSMTNGLVVK RPNGTMTEYG AYGPVPGIHM AQYHYRHQNG
201: FVFSGNEPNS KMSGSSSGAS GARVEVFPTQ QHKY
Arabidopsis Description
NFYB6Nuclear transcription factor Y subunit B-6 [Source:UniProtKB/Swiss-Prot;Acc:Q84W66]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.