Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 6
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT2G13570.1 | KRH13272 | AT3G12480.1 | 21798944 |
| AT2G13570.1 | KRH20611 | AT3G12480.1 | 21798944 |
| AT2G13570.1 | KRH56225 | AT3G12480.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH40945 | Soybean | nucleus | 94.2 | 88.24 |
| KRH57816 | Soybean | cytosol | 29.47 | 78.21 |
| KRH66225 | Soybean | cytosol | 33.82 | 64.81 |
| KRG88870 | Soybean | cytosol | 32.37 | 62.04 |
| KRH50875 | Soybean | nucleus | 33.33 | 57.02 |
| PGSC0003DMT400043176 | Potato | nucleus | 54.11 | 56.57 |
| KRH02238 | Soybean | nucleus | 32.85 | 55.28 |
| KRH37126 | Soybean | nucleus | 30.92 | 54.7 |
| KRH31905 | Soybean | cytosol, mitochondrion, nucleus | 37.68 | 53.79 |
| KRH71548 | Soybean | nucleus | 38.16 | 53.74 |
| KRH73908 | Soybean | nucleus | 42.03 | 52.73 |
| KRH11589 | Soybean | nucleus | 43.0 | 52.05 |
| Solyc12g027650.1.1 | Tomato | nucleus | 52.17 | 51.92 |
| KRH17618 | Soybean | plastid | 28.02 | 51.33 |
| KRH32395 | Soybean | nucleus | 39.61 | 51.25 |
| Bra013143.1-P | Field mustard | nucleus | 51.69 | 51.2 |
| CDX89608 | Canola | nucleus | 51.69 | 51.2 |
| CDX93117 | Canola | nucleus | 51.69 | 51.2 |
| Bra037211.1-P | Field mustard | nucleus | 51.21 | 50.96 |
| CDX81449 | Canola | nucleus | 51.21 | 50.96 |
| CDY37212 | Canola | nucleus | 51.21 | 50.96 |
| KRH36605 | Soybean | nucleus | 42.51 | 49.72 |
| AT2G13570.1 | Thale cress | nucleus | 51.21 | 49.3 |
| KRG95922 | Soybean | nucleus | 38.65 | 49.08 |
| KRH67637 | Soybean | nucleus | 39.61 | 47.95 |
| KRG98494 | Soybean | nucleus | 43.48 | 47.87 |
| KRG92229 | Soybean | nucleus | 39.61 | 47.4 |
| KRH46369 | Soybean | nucleus | 43.48 | 47.12 |
| KRH12126 | Soybean | nucleus | 32.37 | 46.53 |
| KRH34567 | Soybean | nucleus | 38.65 | 45.98 |
| KRG92877 | Soybean | nucleus | 30.43 | 45.65 |
| KRH33913 | Soybean | nucleus | 30.43 | 44.68 |
| KRH59435 | Soybean | nucleus | 42.03 | 38.67 |
| KRH43304 | Soybean | nucleus | 43.0 | 37.71 |
| KRG89094 | Soybean | cytosol | 28.5 | 35.12 |
| KRH66068 | Soybean | nucleus | 28.5 | 33.91 |
| KRH01950 | Soybean | nucleus | 34.78 | 31.86 |
| KRH51197 | Soybean | nucleus | 34.3 | 31.84 |
| KRH56716 | Soybean | cytosol, mitochondrion, nucleus | 19.81 | 26.11 |
| KRH54787 | Soybean | cytosol, mitochondrion, nucleus | 18.84 | 25.0 |
| KRH03842 | Soybean | cytosol, mitochondrion, nucleus | 19.32 | 25.0 |
| KRH70381 | Soybean | cytosol | 23.67 | 21.68 |
| KRH62965 | Soybean | cytosol, nucleus | 11.11 | 21.5 |
| KRH49798 | Soybean | cytosol, golgi, nucleus | 20.29 | 18.18 |
Protein Annotations
| Gene3D:1.10.20.10 | EntrezGene:100780647 | MapMan:15.5.51.2 | EMBL:ACUP02003333 | InterPro:CBFA_NFYB_domain | EnsemblPlantsGene:GLYMA_05G193300 |
| GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006355 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0043565 | GO:GO:0046982 | InterPro:Histone-fold |
| UniProt:I1K511 | InterPro:IPR009072 | EnsemblPlants:KRH59594 | ProteinID:KRH59594 | ProteinID:KRH59594.1 | PFAM:PF00808 |
| PRINTS:PR00615 | ScanProsite:PS00685 | PANTHER:PTHR11064 | PANTHER:PTHR11064:SF88 | SUPFAM:SSF47113 | InterPro:Transcrpt_fac_NFYB/HAP3_CS |
| UniParc:UPI000233A6CE | SEG:seg | : | : | : | : |
Description
hypothetical protein
Coordinates
chr5:+:37832964..37833587
Molecular Weight (calculated)
23726.6 Da
IEP (calculated)
6.246
GRAVY (calculated)
-0.961
Length
207 amino acids
Sequence
(BLAST)
(BLAST)
001: MEDESHNNTL PNGFNTGSPE SPFLKTSTTT TQHNKEQDRF LPIANVGRIM KKVIPPNGKI SKDAKETVQE CVSEFISFVT GEASDKCQRE KRKTINGDDV
101: IWAITTLGFE DYVEPLKTYL QKYKEIEGEK LSIPKQMRSE QRLQQHHNNY HDQNNQPFNG AYASSNLISQ PPYVPTDQKF SLTFSPNSIQ SQLRQQDQID
201: SVGHWYE
101: IWAITTLGFE DYVEPLKTYL QKYKEIEGEK LSIPKQMRSE QRLQQHHNNY HDQNNQPFNG AYASSNLISQ PPYVPTDQKF SLTFSPNSIQ SQLRQQDQID
201: SVGHWYE
001: MTEESPEEDH GSPGVAETNP GSPSSKTNNN NNNNKEQDRF LPIANVGRIM KKVLPGNGKI SKDAKETVQE CVSEFISFVT GEASDKCQRE KRKTINGDDI
101: IWAITTLGFE DYVAPLKVYL CKYRDTEGEK VNSPKQQQQR QQQQQIQQQN HHNYQFQEQD QNNNNMSCTS YISHHHPSPF LPVDHQPFPN IAFSPKSLQK
201: QFPQQHDNNI DSIHW
101: IWAITTLGFE DYVAPLKVYL CKYRDTEGEK VNSPKQQQQR QQQQQIQQQN HHNYQFQEQD QNNNNMSCTS YISHHHPSPF LPVDHQPFPN IAFSPKSLQK
201: QFPQQHDNNI DSIHW
Arabidopsis Description
NFYB7Uncharacterized protein At2g13570 (Fragment) [Source:UniProtKB/TrEMBL;Acc:C0SV44]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.