CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
Predotar:	mitochondrion
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH73503	Soybean	cytosol	3.77	100.0
KRH20611	Soybean	nucleus	73.97	75.26
KRH13272	Soybean	nucleus	71.58	69.9
KRH51962	Soybean	golgi	20.89	69.32
KRH14638	Soybean	nucleus	53.08	56.57
VIT_13s0084g00040.t01	Wine grape	nucleus	62.67	56.13
KRH73504	Soybean	nucleus	50.68	55.22
Bra009295.1-P	Field mustard	nucleus	55.48	54.0
Solyc01g096710.2.1	Tomato	nucleus	49.66	52.54
CDX70004	Canola	nucleus	53.77	52.51
CDX99011	Canola	nucleus	54.11	52.32
PGSC0003DMT400008518	Potato	nucleus	48.97	51.81
AT3G12480.1	Thale cress	nucleus	51.37	51.19
CDY00772	Canola	nucleus	50.0	50.87
CDY00771	Canola	nucleus	49.66	50.52
CDY50342	Canola	nucleus	50.68	50.51
CDX73821	Canola	nucleus	49.32	50.17
CDY50522	Canola	nucleus	49.66	50.17
Bra038724.1-P	Field mustard	nucleus	48.63	48.8
Os05t0494100-01	Rice	nucleus	45.89	46.21
TraesCS1B01G322000.1	Wheat	nucleus	43.84	45.23
TraesCS1A01G310700.1	Wheat	nucleus	43.49	44.88
HORVU1Hr1G067880.1	Barley	nucleus	42.47	44.13
TraesCS1D01G310200.1	Wheat	nucleus	42.81	44.01
OQU78230	Sorghum	nucleus	43.49	43.2
GSMUA_Achr4P00270_001	Banana	mitochondrion	36.99	40.75
HORVU1Hr1G067990.1	Barley	nucleus	43.15	40.26
Zm00001d038557_P001	Maize	golgi	44.86	38.76
CDY08432	Canola	nucleus	23.97	33.02
Bra034756.1-P	Field mustard	nucleus	26.71	30.83

Protein Annotations

Gene3D:1.10.20.10	EntrezGene:100810093	MapMan:15.3.5.7.1.1	EMBL:ACUP02004106	InterPro:CBFA_NFYB_domain	EnsemblPlantsGene:GLYMA_06G311400
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0046982	InterPro:Histone-fold	UniProt:I1KFK3	InterPro:IPR009072	EnsemblPlants:KRH56225
ProteinID:KRH56225	ProteinID:KRH56225.1	PFAM:PF00808	PANTHER:PTHR10252	PANTHER:PTHR10252:SF70	SUPFAM:SSF47113
UniParc:UPI000233A8E7	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr6:-:49984657..49989175

Molecular Weight (calculated)

32351.8 Da

IEP (calculated)

5.168

GRAVY (calculated)

-0.826

Length

292 amino acids

Sequence
(BLAST)

001: MRKKLDTRFP AARIKKIMQA DEDVGKIALA VPVLVSKALE LFLQDLCDRT YEVTLQRGAK TMNSLHLKHC VQSYSVFDFL RDIVSRVPDY GHGHGHGHSE
101: AGADDRALPK RRKAVGDDGN DSDEEAKRSK MRELGHTGTP GRGRGRGRGR GRGRGARTIE RDICHQQVES EPCTSILQSS NDIPNTSVPI DNGPQSKELP
201: KENFVISEES TQSFRNIDLN ANLNENEDKN AGTAVPASLP EPTSMDTAME IKHEEIPGWS LSDVDKMGID TMQLANLGSR LEEDEEDYDE EG

Best Arabidopsis Sequence Match ( AT3G12480.1 )
(BLAST)

001: MRKKLDTRFP AARIKKIMQA DEDVGKIALA VPVLVSKSLE LFLQDLCDRT YEITLERGAK TVSSLHLKHC VERYNVFDFL REVVSKVPDY GHSQGQGHGD
101: VTMDDRSISK RRKPISDEVN DSDEEYKKSK TQEIGSAKTS GRGGRGRGRG RGRGGRAAKA AEREGLNREM EVEAANSGQP PPEDNVKMHA SESSPQEDEK
201: KGIDGTAASN EDTKQHLQSP KEGIDFDLNA ESLDLNETKL APATGTTTTT TAATDSEEYS GWPMMDISKM DPAQLASLGK RIDEDEEDYD EEG

Arabidopsis Description

NF-YC11NF-YC11 [Source:UniProtKB/TrEMBL;Acc:A0A178VDL4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.