Factsheet for Solyc01g096710.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
Predotar:	mitochondrion
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc12g006120.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G12480.1	Solyc12g006120.1.1	AT4G14540.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400008518	Potato	nucleus	97.46	97.46
KRH20611	Soybean	nucleus	55.8	53.66
KRH13272	Soybean	nucleus	56.52	52.17
VIT_13s0084g00040.t01	Wine grape	nucleus	60.87	51.53
CDY00772	Canola	nucleus	51.81	49.83
CDY00771	Canola	nucleus	51.81	49.83
CDX73821	Canola	nucleus	51.81	49.83
KRH56225	Soybean	nucleus	52.54	49.66
CDY50522	Canola	nucleus	50.36	48.1
CDX70004	Canola	nucleus	51.45	47.49
Bra038724.1-P	Field mustard	nucleus	50.0	47.42
AT3G12480.1	Thale cress	nucleus	50.0	47.1
CDY50342	Canola	nucleus	48.91	46.08
CDX99011	Canola	nucleus	50.36	46.03
Bra009295.1-P	Field mustard	nucleus	49.64	45.67
Solyc11g072150.1.1	Tomato	nucleus	50.0	45.25
HORVU1Hr1G067880.1	Barley	nucleus	45.65	44.84
OQU78230	Sorghum	nucleus	47.46	44.56
TraesCS1A01G310700.1	Wheat	nucleus	45.65	44.52
TraesCS1B01G322000.1	Wheat	nucleus	45.65	44.52
Os05t0494100-01	Rice	nucleus	46.38	44.14
TraesCS1D01G310200.1	Wheat	nucleus	45.29	44.01
Zm00001d038557_P001	Maize	golgi	50.0	40.83
HORVU1Hr1G067990.1	Barley	nucleus	45.65	40.26
GSMUA_Achr4P00270_001	Banana	mitochondrion	33.33	34.72
CDY08432	Canola	nucleus	24.28	31.6
Bra034756.1-P	Field mustard	nucleus	27.17	29.64

Protein Annotations

Gene3D:1.10.20.10	MapMan:15.3.5.7.1.1	InterPro:CBFA_NFYB_domain	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005737	GO:GO:0005829
GO:GO:0046982	InterPro:Histone-fold	InterPro:IPR009072	UniProt:K4B059	PFAM:PF00808	PANTHER:PTHR10252
PANTHER:PTHR10252:SF70	SUPFAM:SSF47113	EnsemblPlantsGene:Solyc01g096710.2	EnsemblPlants:Solyc01g096710.2.1	UniParc:UPI0002767C40	SEG:seg

Description

No Description!

Coordinates

chr1:-:87725623..87733528

Molecular Weight (calculated)

30885.1 Da

IEP (calculated)

5.169

GRAVY (calculated)

-0.936

Length

276 amino acids

Sequence
(BLAST)

001: MRKKLDTRFP AARIKKIMQA DEDVGKIAMA VPVLVSKALE LFLQDLCDRT YDITLRRGAK TVNSLHLKHC VQSYNVFDFL REVVSKVPDY GHSDAAGEMP
101: KRRKVAIEEH HDSEDEYKKS RTEMSPVGSS GRGRGRGRGR GRGRVSRADK ELSRPDMQLE SCTSAQQSVQ QNPNPGTQTE NCSEPKESPT QDSTVCDKEN
201: SVVTTPNLKV NVDDNTDKPA APEIAPCNPS PRPVNEKAEE GPQWSLEMDR MVIDPAHMSQ LNTSVAEEEE DYDEEE

Best Arabidopsis Sequence Match ( AT3G12480.1 )
(BLAST)

001: MRKKLDTRFP AARIKKIMQA DEDVGKIALA VPVLVSKSLE LFLQDLCDRT YEITLERGAK TVSSLHLKHC VERYNVFDFL REVVSKVPDY GHSQGQGHGD
101: VTMDDRSISK RRKPISDEVN DSDEEYKKSK TQEIGSAKTS GRGGRGRGRG RGRGGRAAKA AEREGLNREM EVEAANSGQP PPEDNVKMHA SESSPQEDEK
201: KGIDGTAASN EDTKQHLQSP KEGIDFDLNA ESLDLNETKL APATGTTTTT TAATDSEEYS GWPMMDISKM DPAQLASLGK RIDEDEEDYD EEG

Arabidopsis Description

NF-YC11NF-YC11 [Source:UniProtKB/TrEMBL;Acc:A0A178VDL4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.