CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
Predotar:	mitochondrion
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH73503	Soybean	cytosol	3.68	100.0
KRH20611	Soybean	nucleus	84.95	88.5
KRH51962	Soybean	golgi	21.07	71.59
KRH56225	Soybean	nucleus	69.9	71.58
Solyc01g096710.2.1	Tomato	nucleus	52.17	56.52
PGSC0003DMT400008518	Potato	nucleus	51.51	55.8
VIT_13s0084g00040.t01	Wine grape	nucleus	59.87	54.91
KRH14638	Soybean	nucleus	49.83	54.38
KRH73504	Soybean	nucleus	47.49	52.99
Bra009295.1-P	Field mustard	nucleus	52.84	52.67
CDX99011	Canola	nucleus	52.84	52.32
CDX70004	Canola	nucleus	52.17	52.17
CDY50522	Canola	nucleus	50.17	51.9
AT3G12480.1	Thale cress	nucleus	50.84	51.88
CDY50342	Canola	nucleus	50.5	51.54
CDX73821	Canola	nucleus	49.16	51.22
CDY00772	Canola	nucleus	48.49	50.52
CDY00771	Canola	nucleus	48.49	50.52
Bra038724.1-P	Field mustard	nucleus	49.16	50.52
Os05t0494100-01	Rice	nucleus	47.16	48.62
HORVU1Hr1G067880.1	Barley	nucleus	43.14	45.91
TraesCS1B01G322000.1	Wheat	nucleus	43.14	45.58
TraesCS1A01G310700.1	Wheat	nucleus	43.14	45.58
TraesCS1D01G310200.1	Wheat	nucleus	43.14	45.42
OQU78230	Sorghum	nucleus	43.81	44.56
HORVU1Hr1G067990.1	Barley	nucleus	43.48	41.53
Zm00001d038557_P001	Maize	golgi	44.15	39.05
GSMUA_Achr4P00270_001	Banana	mitochondrion	33.78	38.11
CDY08432	Canola	nucleus	24.41	34.43
Bra034756.1-P	Field mustard	nucleus	25.08	29.64

Protein Annotations

Gene3D:1.10.20.10	EntrezGene:100801593	MapMan:15.3.5.7.1.1	EMBL:ACUP02009680	InterPro:CBFA_NFYB_domain	EnsemblPlantsGene:GLYMA_15G227300
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0046982	InterPro:Histone-fold	UniProt:I1MIK6	InterPro:IPR009072	EnsemblPlants:KRH13272
ProteinID:KRH13272	ProteinID:KRH13272.1	PFAM:PF00808	PANTHER:PTHR10252	PANTHER:PTHR10252:SF70	SUPFAM:SSF47113
UniParc:UPI00023D77B5	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr15:+:41988590..41996506

Molecular Weight (calculated)

32906.2 Da

IEP (calculated)

4.784

GRAVY (calculated)

-0.856

Length

299 amino acids

Sequence
(BLAST)

001: MRKKLDTRFP AARIKKIMQA DEDVGKIALA VPVLVSKALE LFLQDLCDRT YEITLQRGAK TMNSLHLKHC VQSYNVFDFL RDVVSRVPDY GHGHGHAEAG
101: PDDRVITKRR KAIGDDGNDS DEEAKRSKML ELGHTGSTGR GRGRGRGRGR GRGRPPLNRE TYHQDAESEP CTSVQPSNPQ NTNTSIAMDN GSESKEIPKE
201: ENIAAPVVPV VSTDSLRNID LNAITNENDD KKASAEADAS ASVPEPDASL PEPPTESKHE EIPGWSLSDV DKMAIDSLQL AQLGRPLEEE EEDYDEEEG

Best Arabidopsis Sequence Match ( AT3G12480.1 )
(BLAST)

001: MRKKLDTRFP AARIKKIMQA DEDVGKIALA VPVLVSKSLE LFLQDLCDRT YEITLERGAK TVSSLHLKHC VERYNVFDFL REVVSKVPDY GHSQGQGHGD
101: VTMDDRSISK RRKPISDEVN DSDEEYKKSK TQEIGSAKTS GRGGRGRGRG RGRGGRAAKA AEREGLNREM EVEAANSGQP PPEDNVKMHA SESSPQEDEK
201: KGIDGTAASN EDTKQHLQSP KEGIDFDLNA ESLDLNETKL APATGTTTTT TAATDSEEYS GWPMMDISKM DPAQLASLGK RIDEDEEDYD EEG

Arabidopsis Description

NF-YC11NF-YC11 [Source:UniProtKB/TrEMBL;Acc:A0A178VDL4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.