CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
Predotar:	mitochondrion
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH73503	Soybean	cytosol	4.01	100.0
KRH73504	Soybean	nucleus	81.02	82.84
KRH51962	Soybean	golgi	20.07	62.5
VIT_06s0009g02120.t01	Wine grape	nucleus	64.23	58.47
PGSC0003DMT400070450	Potato	nucleus	58.03	54.27
KRH20611	Soybean	nucleus	55.84	53.31
KRH56225	Soybean	nucleus	56.57	53.08
Solyc11g072150.1.1	Tomato	nucleus	56.93	51.15
KRH13272	Soybean	nucleus	54.38	49.83
CDY42268	Canola	mitochondrion, nucleus	46.35	49.03
AT5G19490.1	Thale cress	nucleus	46.35	48.11
OQU78230	Sorghum	nucleus	47.08	43.88
Os05t0494100-01	Rice	nucleus	45.62	43.1
TraesCS1A01G310700.1	Wheat	nucleus	43.43	42.05
TraesCS1B01G322000.1	Wheat	nucleus	43.43	42.05
HORVU1Hr1G067880.1	Barley	nucleus	43.07	41.99
TraesCS1D01G310200.1	Wheat	nucleus	43.43	41.9
GSMUA_Achr4P00270_001	Banana	mitochondrion	39.42	40.75
HORVU1Hr1G067990.1	Barley	nucleus	43.43	38.02
Zm00001d038557_P001	Maize	golgi	46.72	37.87

Protein Annotations

Gene3D:1.10.20.10	EntrezGene:100779786	MapMan:15.3.5.7.1.1	EMBL:ACUP02008513	InterPro:CBFA_NFYB_domain	ncoils:Coil
EnsemblPlantsGene:GLYMA_14G038800	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0046982	InterPro:Histone-fold	InterPro:IPR009072	UniProt:K7M4T4
EnsemblPlants:KRH14638	ProteinID:KRH14638	ProteinID:KRH14638.1	PFAM:PF00808	PANTHER:PTHR10252	PANTHER:PTHR10252:SF77
SUPFAM:SSF47113	UniParc:UPI00023D3E50	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr14:-:2919514..2923525

Molecular Weight (calculated)

30712.8 Da

IEP (calculated)

4.647

GRAVY (calculated)

-0.867

Length

274 amino acids

Sequence
(BLAST)

001: MRKKLDTRFP AARIKKIMQA DEDVGKIAMA VPLLVSKALE LFLQDLCDQT YEITLRRGAK TMNAFHLKQC VQTFNVFDFL KDIVSKVPDL GSSVATGDDH
101: AVTKRRKVAG DDDNDSDEEL KRNKKPEPGH SSGRGRGRGR GRGIRTVDQE MGSHAKCEDD SHVLKQNDNH QSNESMENAS EPAEVKQSFP VSKPTEVCIR
201: NFDLNLDPDE DMDSLDTPTS VPASSSAKSV SEEKHEEYPG WPLSDMEKMT IDPIQLANIN GRIDEDEEDY DEEM

Best Arabidopsis Sequence Match ( AT3G12480.1 )
(BLAST)

001: MRKKLDTRFP AARIKKIMQA DEDVGKIALA VPVLVSKSLE LFLQDLCDRT YEITLERGAK TVSSLHLKHC VERYNVFDFL REVVSKVPDY GHSQGQGHGD
101: VTMDDRSISK RRKPISDEVN DSDEEYKKSK TQEIGSAKTS GRGGRGRGRG RGRGGRAAKA AEREGLNREM EVEAANSGQP PPEDNVKMHA SESSPQEDEK
201: KGIDGTAASN EDTKQHLQSP KEGIDFDLNA ESLDLNETKL APATGTTTTT TAATDSEEYS GWPMMDISKM DPAQLASLGK RIDEDEEDYD EEG

Arabidopsis Description

NF-YC11NF-YC11 [Source:UniProtKB/TrEMBL;Acc:A0A178VDL4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.