CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 1
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, secretory
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
TargetP:	secretory
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH14638	Soybean	nucleus	82.84	81.02
KRH51962	Soybean	golgi	20.52	62.5
VIT_06s0009g02120.t01	Wine grape	nucleus	65.3	58.14
PGSC0003DMT400070450	Potato	nucleus	58.58	53.58
KRH20611	Soybean	nucleus	54.48	50.87
KRH56225	Soybean	nucleus	55.22	50.68
Solyc11g072150.1.1	Tomato	nucleus	57.09	50.16
AT5G19490.1	Thale cress	nucleus	47.39	48.11
KRH13272	Soybean	nucleus	52.99	47.49
CDY42268	Canola	mitochondrion, nucleus	45.52	47.1
Os05t0494100-01	Rice	nucleus	46.64	43.1
OQU78230	Sorghum	nucleus	45.9	41.84
HORVU1Hr1G067880.1	Barley	nucleus	42.54	40.57
TraesCS1D01G310200.1	Wheat	nucleus	42.91	40.49
TraesCS1A01G310700.1	Wheat	nucleus	42.54	40.28
TraesCS1B01G322000.1	Wheat	nucleus	42.54	40.28
GSMUA_Achr4P00270_001	Banana	mitochondrion	38.06	38.49
HORVU1Hr1G067990.1	Barley	nucleus	42.16	36.1
Zm00001d038557_P001	Maize	golgi	45.15	35.8
KRH73503	Soybean	cytosol	0.0	0.0

Protein Annotations

Gene3D:1.10.20.10	MapMan:15.3.5.7.1.1	UniProt:A0A0R0L278	EMBL:ACUP02001280	InterPro:CBFA_NFYB_domain	EnsemblPlantsGene:GLYMA_02G2770001
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0046982	InterPro:Histone-fold	InterPro:IPR009072	EnsemblPlants:KRH73504	ProteinID:KRH73504
ProteinID:KRH73504.1	PFAM:PF00808	PANTHER:PTHR10252	PANTHER:PTHR10252:SF77	SUPFAM:SSF47113	UniParc:UPI0006EDE286
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr2:+:45985111..45988474

Molecular Weight (calculated)

29859.7 Da

IEP (calculated)

4.399

GRAVY (calculated)

-0.804

Length

268 amino acids

Sequence
(BLAST)

001: ARIKKIMQAD EDVGKIAMAV PLLVSKALEL FLQDLCDRTY DITLRRGAKT MNAFHLKQCV QTFNVFDFLK DIVSKVPDLG GSVATGDDHA VTKRRKVAGD
101: DDNDSDEELK RNKKPEPGHS SGRGRGRGRG RGLGGGIRTV DQEMSSHAKC EDDSDVLKQN DNHTQSNESM ENVLEPEEVK QSFPVSELAE VSVRNFDLNL
201: DPDENMDSLD TPTSVPTSSS AKSVSEEKHE EYPGWSLSEM EKMIIDPIQL ANLNGRIDED EEDYDEEM

Best Arabidopsis Sequence Match ( AT3G12480.1 )
(BLAST)

001: MRKKLDTRFP AARIKKIMQA DEDVGKIALA VPVLVSKSLE LFLQDLCDRT YEITLERGAK TVSSLHLKHC VERYNVFDFL REVVSKVPDY GHSQGQGHGD
101: VTMDDRSISK RRKPISDEVN DSDEEYKKSK TQEIGSAKTS GRGGRGRGRG RGRGGRAAKA AEREGLNREM EVEAANSGQP PPEDNVKMHA SESSPQEDEK
201: KGIDGTAASN EDTKQHLQSP KEGIDFDLNA ESLDLNETKL APATGTTTTT TAATDSEEYS GWPMMDISKM DPAQLASLGK RIDEDEEDYD EEG

Arabidopsis Description

NF-YC11NF-YC11 [Source:UniProtKB/TrEMBL;Acc:A0A178VDL4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.