Factsheet for VIT_06s0009g02120.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH73503	Soybean	cytosol	3.65	100.0
KRH73504	Soybean	nucleus	58.14	65.3
KRH14638	Soybean	nucleus	58.47	64.23
PGSC0003DMT400070450	Potato	nucleus	54.82	56.31
VIT_13s0084g00040.t01	Wine grape	nucleus	60.8	56.13
Solyc11g072150.1.1	Tomato	nucleus	54.49	53.77
AT5G19490.1	Thale cress	nucleus	44.85	51.14
CDY42268	Canola	mitochondrion, nucleus	43.52	50.58
Os05t0494100-01	Rice	nucleus	47.84	49.66
HORVU1Hr1G067880.1	Barley	nucleus	44.85	48.04
OQU78230	Sorghum	nucleus	46.51	47.62
TraesCS1D01G310200.1	Wheat	nucleus	43.85	46.48
TraesCS1A01G310700.1	Wheat	nucleus	42.86	45.58
TraesCS1B01G322000.1	Wheat	nucleus	42.86	45.58
GSMUA_Achr4P00270_001	Banana	mitochondrion	39.2	44.53
HORVU1Hr1G067990.1	Barley	nucleus	44.52	42.81
Zm00001d038557_P001	Maize	golgi	46.51	41.42

Protein Annotations

Gene3D:1.10.20.10	EntrezGene:100253016	wikigene:100253016	MapMan:15.3.5.7.1.1	EMBL:AM426904	ProteinID:CAN71308
ProteinID:CAN71308.1	InterPro:CBFA_NFYB_domain	ProteinID:CBI24317	ProteinID:CBI24317.3	ncoils:Coil	UniProt:D7T1D7
EMBL:FN595504	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0046982	InterPro:Histone-fold	InterPro:IPR009072	EntrezGene:LOC100253016
wikigene:LOC100253016	PFAM:PF00808	PANTHER:PTHR10252	PANTHER:PTHR10252:SF77	SUPFAM:SSF47113	UniParc:UPI0001983680
ArrayExpress:VIT_06s0009g02120	EnsemblPlantsGene:VIT_06s0009g02120	EnsemblPlants:VIT_06s0009g02120.t01	RefSeq:XP_002268866	RefSeq:XP_002268866.1	SEG:seg

Description

No Description!

Coordinates

chr6:-:14421331..14429779

Molecular Weight (calculated)

33483.7 Da

IEP (calculated)

4.667

GRAVY (calculated)

-0.997

Length

301 amino acids

Sequence
(BLAST)

001: MRKKLDTRFP ASRIKKIMQA DEDVGKIALA VPLLVSKALE LFLQDLCDRT YQITLERGAK TMSSLHLKQC VQRFNVFDFL REIVSKVPDL GCSDAGGEDR
101: SASKRRKVVD DEGNDSDEES KRSRMHETGH TVGSGSGSGS GRGRGRGRGR GRGRGSRTIE RDTIAESEKP EDDTDMHTNN DNQSQNPETR DNGAEPEESK
201: ENISVVKNES KENISVGKNA DSCVRNFDLN VDLDENGDST SILPAAPAPA PVTPSPKLTE MKHEEYPGWS LSDMEKMEID PIQLANLNRR IDEDEEDYDE
301: E

Best Arabidopsis Sequence Match ( AT3G12480.1 )
(BLAST)

001: MRKKLDTRFP AARIKKIMQA DEDVGKIALA VPVLVSKSLE LFLQDLCDRT YEITLERGAK TVSSLHLKHC VERYNVFDFL REVVSKVPDY GHSQGQGHGD
101: VTMDDRSISK RRKPISDEVN DSDEEYKKSK TQEIGSAKTS GRGGRGRGRG RGRGGRAAKA AEREGLNREM EVEAANSGQP PPEDNVKMHA SESSPQEDEK
201: KGIDGTAASN EDTKQHLQSP KEGIDFDLNA ESLDLNETKL APATGTTTTT TAATDSEEYS GWPMMDISKM DPAQLASLGK RIDEDEEDYD EEG

Arabidopsis Description

NF-YC11NF-YC11 [Source:UniProtKB/TrEMBL;Acc:A0A178VDL4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.