Factsheet for GSMUA_Achr4P00270_001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

nucleus 3
peroxisome 1
mitochondrion 4

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH73503	Soybean	cytosol	3.4	81.82
KRH14638	Soybean	nucleus	40.75	39.42
VIT_06s0009g02120.t01	Wine grape	nucleus	44.53	39.2
PGSC0003DMT400070450	Potato	nucleus	42.26	38.23
HORVU1Hr1G067880.1	Barley	nucleus	40.38	38.08
KRH73504	Soybean	nucleus	38.49	38.06
TraesCS1B01G322000.1	Wheat	nucleus	40.38	37.81
TraesCS1A01G310700.1	Wheat	nucleus	40.38	37.81
TraesCS1D01G310200.1	Wheat	nucleus	40.38	37.68
Os05t0494100-01	Rice	nucleus	41.13	37.59
VIT_13s0084g00040.t01	Wine grape	nucleus	45.66	37.12
KRH56225	Soybean	nucleus	40.75	36.99
AT5G19490.1	Thale cress	nucleus	36.6	36.74
OQU78230	Sorghum	nucleus	40.75	36.73
Solyc11g072150.1.1	Tomato	nucleus	42.26	36.72
CDY42268	Canola	mitochondrion, nucleus	35.85	36.68
GSMUA_Achr9P21090_001	Banana	nucleus	34.72	36.65
KRH20611	Soybean	nucleus	38.49	35.54
CDY50522	Canola	nucleus	37.74	34.6
GSMUA_Achr2P03550_001	Banana	nucleus	33.21	34.51
CDY00772	Canola	nucleus	37.36	34.49
CDY00771	Canola	nucleus	37.36	34.49
CDX73821	Canola	nucleus	37.36	34.49
HORVU1Hr1G067990.1	Barley	nucleus	40.38	34.19
PGSC0003DMT400008518	Potato	nucleus	35.47	34.06
GSMUA_Achr10P...	Banana	nucleus	32.83	33.98
KRH13272	Soybean	nucleus	38.11	33.78
CDX70004	Canola	nucleus	38.11	33.78
Bra038724.1-P	Field mustard	nucleus	36.98	33.68
AT3G12480.1	Thale cress	nucleus	36.98	33.45
CDX99011	Canola	nucleus	38.11	33.44
Solyc01g096710.2.1	Tomato	nucleus	34.72	33.33
CDY50342	Canola	nucleus	35.47	32.08
Bra009295.1-P	Field mustard	nucleus	36.23	32.0
Zm00001d038557_P001	Maize	golgi	38.87	30.47
CDY08432	Canola	nucleus	20.38	25.47
Bra034756.1-P	Field mustard	nucleus	21.89	22.92

Protein Annotations

EnsemblPlants:GSMUA_Achr4P00270_001	EnsemblPlants:GSMUA_Achr4T00270_001	EnsemblPlantsGene:GSMUA_Achr4G00270_001	Gene3D:1.10.20.10	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0046982
InterPro:CBFA_NFYB_domain	InterPro:Histone-fold	InterPro:IPR009072	PANTHER:PTHR10252	PANTHER:PTHR10252:SF77	PFAM:PF00808
SEG:seg	SUPFAM:SSF47113	UniParc:UPI00029636EF	UniProt:M0SJU4	MapMan:15.3.5.7.1.1	:

Description

histone-like transcription factor and archaeal histone, putative, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr4G00270_001]

Coordinates

chr4:+:237866..244842

Molecular Weight (calculated)

29133.3 Da

IEP (calculated)

5.912

GRAVY (calculated)

-0.417

Length

265 amino acids

Sequence
(BLAST)

001: MRRKLHTRFP ATRIKKIMQS DEDIGKIALA VPVLVSKALE LFLQDLCGKT YSMTLHRGVK TMSSFPLKQC VHKFTVFDFL KDLVSNVPDV GGSDADPDDK
101: ASKKRFSDVD IQLVFHQEAC RSSSSSSGSR SRRGQGRRCR GKGRGSLVVD GVEKGSVDFN IYEDDPGTQH DDELTHSETD RDMATASEEN CVTSSSVRAT
201: VGNFDLNLDF NDIEEIAPAS ATTAAAMATI FKVNGDLTDD YLGSSISNMD KITIDPVQFA LLHRD

Best Arabidopsis Sequence Match ( AT5G19490.1 )
(BLAST)

001: MKKKLQTRFP ATRIKKIMQT DEEVGKIAMA VPLLVSKALE LFLQDLCNHT YDVTLSRGAK TVNAFHLKQC VQATNVFDFL RDTVAKVPDL GGSDTEDQSA
101: TKRRKVVDGS SCNDEDMIKT TQMHEVKHTS CGRGRRGRGR GRSSGRTGSG LSLKFEEDLE DGSPESSRTP SPENGSLSHD DTSWKKVASH NNHHSSNSEV
201: KVRNFDLNVE LDENGDNATW LETQLERSPD YPLEINEMKI DPDDQQQASA SDEEDYDEES IDQE

Arabidopsis Description

Histone superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4K162]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.