Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH73503 | Soybean | cytosol | 3.41 | 81.82 |
| CDY42268 | Canola | mitochondrion, nucleus | 62.88 | 64.09 |
| KRH73504 | Soybean | nucleus | 48.11 | 47.39 |
| KRH14638 | Soybean | nucleus | 48.11 | 46.35 |
| VIT_06s0009g02120.t01 | Wine grape | nucleus | 51.14 | 44.85 |
| PGSC0003DMT400070450 | Potato | nucleus | 45.45 | 40.96 |
| Os05t0494100-01 | Rice | nucleus | 43.94 | 40.0 |
| Solyc11g072150.1.1 | Tomato | nucleus | 45.08 | 39.02 |
| HORVU1Hr1G067880.1 | Barley | nucleus | 40.15 | 37.72 |
| AT3G12480.1 | Thale cress | nucleus | 41.67 | 37.54 |
| OQU78230 | Sorghum | nucleus | 41.67 | 37.41 |
| TraesCS1A01G310700.1 | Wheat | nucleus | 39.39 | 36.75 |
| TraesCS1B01G322000.1 | Wheat | nucleus | 39.39 | 36.75 |
| TraesCS1D01G310200.1 | Wheat | nucleus | 39.39 | 36.62 |
| GSMUA_Achr4P00270_001 | Banana | mitochondrion | 36.74 | 36.6 |
| HORVU1Hr1G067990.1 | Barley | nucleus | 40.15 | 33.87 |
| Zm00001d038557_P001 | Maize | golgi | 41.67 | 32.54 |
Protein Annotations
| Gene3D:1.10.20.10 | MapMan:15.3.5.7.1.1 | EntrezGene:832069 | ProteinID:AED92717.1 | ArrayExpress:AT5G19490 | EnsemblPlantsGene:AT5G19490 |
| RefSeq:AT5G19490 | TAIR:AT5G19490 | RefSeq:AT5G19490-TAIR-G | EnsemblPlants:AT5G19490.1 | TAIR:AT5G19490.1 | InterPro:CBFA_NFYB_domain |
| UniProt:F4K162 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005634 | GO:GO:0008150 | GO:GO:0046982 | InterPro:Histone-fold | InterPro:IPR009072 |
| RefSeq:NP_197450.2 | PFAM:PF00808 | PO:PO:0000005 | PO:PO:0000293 | PO:PO:0001078 | PO:PO:0004507 |
| PO:PO:0007611 | PO:PO:0007616 | PO:PO:0009009 | PO:PO:0009030 | PO:PO:0009046 | PO:PO:0009047 |
| PO:PO:0009052 | PANTHER:PTHR10252 | PANTHER:PTHR10252:SF77 | SUPFAM:SSF47113 | UniParc:UPI00017394F0 | SEG:seg |
Description
Histone superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4K162]
Coordinates
chr5:-:6576510..6578508
Molecular Weight (calculated)
29562.1 Da
IEP (calculated)
4.848
GRAVY (calculated)
-0.953
Length
264 amino acids
Sequence
(BLAST)
(BLAST)
001: MKKKLQTRFP ATRIKKIMQT DEEVGKIAMA VPLLVSKALE LFLQDLCNHT YDVTLSRGAK TVNAFHLKQC VQATNVFDFL RDTVAKVPDL GGSDTEDQSA
101: TKRRKVVDGS SCNDEDMIKT TQMHEVKHTS CGRGRRGRGR GRSSGRTGSG LSLKFEEDLE DGSPESSRTP SPENGSLSHD DTSWKKVASH NNHHSSNSEV
201: KVRNFDLNVE LDENGDNATW LETQLERSPD YPLEINEMKI DPDDQQQASA SDEEDYDEES IDQE
101: TKRRKVVDGS SCNDEDMIKT TQMHEVKHTS CGRGRRGRGR GRSSGRTGSG LSLKFEEDLE DGSPESSRTP SPENGSLSHD DTSWKKVASH NNHHSSNSEV
201: KVRNFDLNVE LDENGDNATW LETQLERSPD YPLEINEMKI DPDDQQQASA SDEEDYDEES IDQE
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.