Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc11g072150.1.1 | Tomato | nucleus | 94.88 | 91.15 |
| KRH73503 | Soybean | cytosol | 3.41 | 90.91 |
| KRH73504 | Soybean | nucleus | 53.58 | 58.58 |
| KRH14638 | Soybean | nucleus | 54.27 | 58.03 |
| VIT_06s0009g02120.t01 | Wine grape | nucleus | 56.31 | 54.82 |
| PGSC0003DMT400008518 | Potato | nucleus | 47.44 | 50.36 |
| HORVU1Hr1G067880.1 | Barley | nucleus | 45.73 | 47.69 |
| TraesCS1D01G310200.1 | Wheat | nucleus | 45.73 | 47.18 |
| Os05t0494100-01 | Rice | nucleus | 46.42 | 46.9 |
| TraesCS1A01G310700.1 | Wheat | nucleus | 45.05 | 46.64 |
| TraesCS1B01G322000.1 | Wheat | nucleus | 45.05 | 46.64 |
| CDY42268 | Canola | mitochondrion, nucleus | 40.96 | 46.33 |
| AT5G19490.1 | Thale cress | nucleus | 40.96 | 45.45 |
| HORVU1Hr1G067990.1 | Barley | nucleus | 45.73 | 42.81 |
| OQU78230 | Sorghum | nucleus | 42.66 | 42.52 |
| GSMUA_Achr4P00270_001 | Banana | mitochondrion | 38.23 | 42.26 |
| Zm00001d038557_P001 | Maize | golgi | 45.05 | 39.05 |
Protein Annotations
| Gene3D:1.10.20.10 | EntrezGene:102591286 | MapMan:15.3.5.7.1.1 | InterPro:CBFA_NFYB_domain | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0046982 |
| InterPro:Histone-fold | InterPro:IPR009072 | UniProt:M1CM70 | PFAM:PF00808 | EnsemblPlantsGene:PGSC0003DMG400027390 | PGSC:PGSC0003DMG400027390 |
| EnsemblPlants:PGSC0003DMT400070450 | PANTHER:PTHR10252 | PANTHER:PTHR10252:SF70 | SUPFAM:SSF47113 | UniParc:UPI0002960B4A | RefSeq:XP_006340356.1 |
| SEG:seg | : | : | : | : | : |
Description
Negative cofactor 2 transcriptional co-repressor [Source:PGSC_GENE;Acc:PGSC0003DMG400027390]
Coordinates
chr11:-:43724604..43729277
Molecular Weight (calculated)
32278.5 Da
IEP (calculated)
4.730
GRAVY (calculated)
-0.832
Length
293 amino acids
Sequence
(BLAST)
(BLAST)
001: MRKRLDTRFP AARIKKIMQA DEDVGKIAMA VPLLVSKALE LFLQDLCDRT YEITLKKGAK TMNSFHLKHC IQSFNVFDFL KDVVSRVPDL GGSDASAESA
101: TKRRKVAEED DHDSDDDAKR NHANETANNS GTGRGRGRGR GRGRGRGARA VEKGDSNVHS EKLEDPAADV SHQKDDEKQK QNDERMVDYV AEPAVDSKNI
201: SAAKCSPEVV APARNFDLNI DLNESVESTP MPSEVPLSST ATPAPAPPPP EVKHEEIPGW SLSEMEKMAI DPIQLANLNQ GLDEEEEDYD EEG
101: TKRRKVAEED DHDSDDDAKR NHANETANNS GTGRGRGRGR GRGRGRGARA VEKGDSNVHS EKLEDPAADV SHQKDDEKQK QNDERMVDYV AEPAVDSKNI
201: SAAKCSPEVV APARNFDLNI DLNESVESTP MPSEVPLSST ATPAPAPPPP EVKHEEIPGW SLSEMEKMAI DPIQLANLNQ GLDEEEEDYD EEG
001: MKKKLQTRFP ATRIKKIMQT DEEVGKIAMA VPLLVSKALE LFLQDLCNHT YDVTLSRGAK TVNAFHLKQC VQATNVFDFL RDTVAKVPDL GGSDTEDQSA
101: TKRRKVVDGS SCNDEDMIKT TQMHEVKHTS CGRGRRGRGR GRSSGRTGSG LSLKFEEDLE DGSPESSRTP SPENGSLSHD DTSWKKVASH NNHHSSNSEV
201: KVRNFDLNVE LDENGDNATW LETQLERSPD YPLEINEMKI DPDDQQQASA SDEEDYDEES IDQE
101: TKRRKVVDGS SCNDEDMIKT TQMHEVKHTS CGRGRRGRGR GRSSGRTGSG LSLKFEEDLE DGSPESSRTP SPENGSLSHD DTSWKKVASH NNHHSSNSEV
201: KVRNFDLNVE LDENGDNATW LETQLERSPD YPLEINEMKI DPDDQQQASA SDEEDYDEES IDQE
Arabidopsis Description
Histone superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4K162]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.