Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| PGSC0003DMT400010977 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G12480.1 | PGSC0003DMT400010977 | AT4G14540.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc01g096710.2.1 | Tomato | nucleus | 97.46 | 97.46 |
| KRH20611 | Soybean | nucleus | 55.07 | 52.96 |
| VIT_13s0084g00040.t01 | Wine grape | nucleus | 61.23 | 51.84 |
| KRH13272 | Soybean | nucleus | 55.8 | 51.51 |
| CDX73821 | Canola | nucleus | 51.45 | 49.48 |
| CDY00771 | Canola | nucleus | 51.45 | 49.48 |
| CDY00772 | Canola | nucleus | 51.45 | 49.48 |
| KRH56225 | Soybean | nucleus | 51.81 | 48.97 |
| CDY50522 | Canola | nucleus | 50.0 | 47.75 |
| PGSC0003DMT400070450 | Potato | nucleus | 50.36 | 47.44 |
| CDX70004 | Canola | nucleus | 51.09 | 47.16 |
| Bra038724.1-P | Field mustard | nucleus | 49.64 | 47.08 |
| AT3G12480.1 | Thale cress | nucleus | 49.64 | 46.76 |
| CDY50342 | Canola | nucleus | 48.55 | 45.73 |
| CDX99011 | Canola | nucleus | 50.0 | 45.7 |
| Bra009295.1-P | Field mustard | nucleus | 49.28 | 45.33 |
| OQU78230 | Sorghum | nucleus | 48.19 | 45.24 |
| TraesCS1A01G310700.1 | Wheat | nucleus | 46.01 | 44.88 |
| TraesCS1B01G322000.1 | Wheat | nucleus | 46.01 | 44.88 |
| HORVU1Hr1G067880.1 | Barley | nucleus | 45.65 | 44.84 |
| TraesCS1D01G310200.1 | Wheat | nucleus | 45.65 | 44.37 |
| Os05t0494100-01 | Rice | nucleus | 46.01 | 43.79 |
| Zm00001d038557_P001 | Maize | golgi | 50.72 | 41.42 |
| HORVU1Hr1G067990.1 | Barley | nucleus | 45.65 | 40.26 |
| GSMUA_Achr4P00270_001 | Banana | mitochondrion | 34.06 | 35.47 |
| CDY08432 | Canola | nucleus | 24.64 | 32.08 |
| Bra034756.1-P | Field mustard | nucleus | 27.17 | 29.64 |
Protein Annotations
| Gene3D:1.10.20.10 | EntrezGene:102591894 | MapMan:15.3.5.7.1.1 | InterPro:CBFA_NFYB_domain | ncoils:Coil | GO:GO:0003674 |
| GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| GO:GO:0005737 | GO:GO:0005829 | GO:GO:0046982 | InterPro:Histone-fold | InterPro:IPR009072 | UniProt:M0ZUP5 |
| PFAM:PF00808 | EnsemblPlantsGene:PGSC0003DMG400003296 | PGSC:PGSC0003DMG400003296 | EnsemblPlants:PGSC0003DMT400008518 | PANTHER:PTHR10252 | PANTHER:PTHR10252:SF70 |
| SUPFAM:SSF47113 | UniParc:UPI0002957E95 | RefSeq:XP_006347683.1 | SEG:seg | : | : |
Description
Negative cofactor 2 transcriptional co-repressor [Source:PGSC_GENE;Acc:PGSC0003DMG400003296]
Coordinates
chr1:-:74443508..74451912
Molecular Weight (calculated)
30812.0 Da
IEP (calculated)
5.176
GRAVY (calculated)
-0.957
Length
276 amino acids
Sequence
(BLAST)
(BLAST)
001: MRKKLDTRFP AARIKKIMQA DEDVGKIAMA VPVLVSKALE LFLQDLCDRT YDITLRRGAK TVNSLHLKHC VQSYNVFDFL REVVSKVPDY GHSDAAGEMP
101: KRRKVAIEEH HDSEDEYKKS RTEMSPVSSS GRGRGRGRGR GRGRVSRADK ELARPDMQLE SCTSAQQSGQ QNPNPGTQTE NCSEPKESPK QDSTVGDKEN
201: SVVTTPNLKV DVDDSTDKPA APEIAPCNPS PRPVNEKAEE GPQWSLEMDR MVIDPAHMSQ LNTSVAEEEE DYDEEE
101: KRRKVAIEEH HDSEDEYKKS RTEMSPVSSS GRGRGRGRGR GRGRVSRADK ELARPDMQLE SCTSAQQSGQ QNPNPGTQTE NCSEPKESPK QDSTVGDKEN
201: SVVTTPNLKV DVDDSTDKPA APEIAPCNPS PRPVNEKAEE GPQWSLEMDR MVIDPAHMSQ LNTSVAEEEE DYDEEE
001: MRKKLDTRFP AARIKKIMQA DEDVGKIALA VPVLVSKSLE LFLQDLCDRT YEITLERGAK TVSSLHLKHC VERYNVFDFL REVVSKVPDY GHSQGQGHGD
101: VTMDDRSISK RRKPISDEVN DSDEEYKKSK TQEIGSAKTS GRGGRGRGRG RGRGGRAAKA AEREGLNREM EVEAANSGQP PPEDNVKMHA SESSPQEDEK
201: KGIDGTAASN EDTKQHLQSP KEGIDFDLNA ESLDLNETKL APATGTTTTT TAATDSEEYS GWPMMDISKM DPAQLASLGK RIDEDEEDYD EEG
101: VTMDDRSISK RRKPISDEVN DSDEEYKKSK TQEIGSAKTS GRGGRGRGRG RGRGGRAAKA AEREGLNREM EVEAANSGQP PPEDNVKMHA SESSPQEDEK
201: KGIDGTAASN EDTKQHLQSP KEGIDFDLNA ESLDLNETKL APATGTTTTT TAATDSEEYS GWPMMDISKM DPAQLASLGK RIDEDEEDYD EEG
Arabidopsis Description
NF-YC11NF-YC11 [Source:UniProtKB/TrEMBL;Acc:A0A178VDL4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.