Factsheet for TraesCS1D01G310200.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH73503	Soybean	cytosol	3.87	100.0
TraesCS1B01G322000.1	Wheat	nucleus	89.79	90.11
TraesCS1A01G310700.1	Wheat	nucleus	89.79	90.11
HORVU1Hr1G067880.1	Barley	nucleus	79.58	80.43
HORVU1Hr1G067990.1	Barley	nucleus	80.99	73.48
Os05t0494100-01	Rice	nucleus	71.48	70.0
OQU78230	Sorghum	nucleus	63.73	61.56
Zm00001d038557_P001	Maize	golgi	62.32	52.37
PGSC0003DMT400070450	Potato	nucleus	47.18	45.73
PGSC0003DMT400008518	Potato	nucleus	44.37	45.65
Solyc01g096710.2.1	Tomato	nucleus	44.01	45.29
KRH20611	Soybean	nucleus	45.07	44.6
CDX73821	Canola	nucleus	44.72	44.25
VIT_06s0009g02120.t01	Wine grape	nucleus	46.48	43.85
Solyc11g072150.1.1	Tomato	nucleus	46.83	43.61
CDY00772	Canola	nucleus	44.01	43.55
CDY00771	Canola	nucleus	44.01	43.55
KRH14638	Soybean	nucleus	41.9	43.43
KRH13272	Soybean	nucleus	45.42	43.14
KRH73504	Soybean	nucleus	40.49	42.91
CDY50522	Canola	nucleus	43.66	42.91
CDX70004	Canola	nucleus	45.07	42.81
KRH56225	Soybean	nucleus	44.01	42.81
Bra038724.1-P	Field mustard	nucleus	43.66	42.61
AT3G12480.1	Thale cress	nucleus	43.66	42.32
VIT_13s0084g00040.t01	Wine grape	nucleus	48.24	42.02
CDY50342	Canola	nucleus	43.31	41.98
CDX99011	Canola	nucleus	44.01	41.39
TraesCS4D01G158200.2	Wheat	nucleus	36.62	40.78
Bra009295.1-P	Field mustard	nucleus	42.96	40.67
CDY42268	Canola	mitochondrion, nucleus	36.97	40.54
GSMUA_Achr4P00270_001	Banana	mitochondrion	37.68	40.38
AT5G19490.1	Thale cress	nucleus	36.62	39.39
Bra034756.1-P	Field mustard	nucleus	24.3	27.27
CDY08432	Canola	nucleus	19.37	25.94

Protein Annotations

EnsemblPlants:TraesCS1D01G310200.1	EnsemblPlantsGene:TraesCS1D01G310200	Gene3D:1.10.20.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0046982	InterPro:CBFA_NFYB_domain	InterPro:Histone-fold	InterPro:IPR009072	PANTHER:PTHR10252	PANTHER:PTHR10252:SF77
PFAM:PF00808	SEG:seg	SUPFAM:SSF47113	MapMan:15.3.5.7.1.1	:	:

Description

No Description!

Coordinates

chr1D:+:406545964..406551455

Molecular Weight (calculated)

31662.1 Da

IEP (calculated)

5.656

GRAVY (calculated)

-0.790

Length

284 amino acids

Sequence
(BLAST)

001: MRKKLDTRFP APRIKKIMQA DEDVGKIALA VPVLVSKALE LFLQDLCDRT YNITVEKGVK TVSSSHLKQC IHSYDVYDFL KNVASKVPDL GAPDSSVDDK
101: LGKRRKHGED ESEEESKRTR NEAACHTSNG RGRGRGRGRG RRAGRGAERE IEHHELGCAQ FSKPGHLKVE IGDVVLDTSE TKEHTPLSNA RASLRNIDLN
201: LDLADYEEDT PQVQPSAPSA PVVTVAPQVQ TSGPSVSQLK EEVETKDFLG WQMPEMNKMA MDPVQFALSS NHRLEEDEDY DNEE

Best Arabidopsis Sequence Match ( AT3G12480.1 )
(BLAST)

001: MRKKLDTRFP AARIKKIMQA DEDVGKIALA VPVLVSKSLE LFLQDLCDRT YEITLERGAK TVSSLHLKHC VERYNVFDFL REVVSKVPDY GHSQGQGHGD
101: VTMDDRSISK RRKPISDEVN DSDEEYKKSK TQEIGSAKTS GRGGRGRGRG RGRGGRAAKA AEREGLNREM EVEAANSGQP PPEDNVKMHA SESSPQEDEK
201: KGIDGTAASN EDTKQHLQSP KEGIDFDLNA ESLDLNETKL APATGTTTTT TAATDSEEYS GWPMMDISKM DPAQLASLGK RIDEDEEDYD EEG

Arabidopsis Description

NF-YC11NF-YC11 [Source:UniProtKB/TrEMBL;Acc:A0A178VDL4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.