Factsheet for Bra038724.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra001615.1-P
Bra021147.1-P
Bra027199.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G12480.1	Bra001615.1-P	AT4G14540.1	21798944
AT3G12480.1	Bra021147.1-P	AT4G14540.1	21798944
AT3G12480.1	Bra027199.1-P	AT4G14540.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY50522	Canola	nucleus	95.53	96.19
AT3G12480.1	Thale cress	nucleus	80.07	79.52
Bra009295.1-P	Field mustard	nucleus	57.04	55.33
Bra034756.1-P	Field mustard	nucleus	47.08	54.15
KRH20611	Soybean	nucleus	50.52	51.22
Solyc01g096710.2.1	Tomato	nucleus	47.42	50.0
PGSC0003DMT400008518	Potato	nucleus	47.08	49.64
KRH13272	Soybean	nucleus	50.52	49.16
KRH56225	Soybean	nucleus	48.8	48.63
VIT_13s0084g00040.t01	Wine grape	nucleus	52.92	47.24
HORVU1Hr1G067880.1	Barley	nucleus	43.64	45.2
TraesCS1B01G322000.1	Wheat	nucleus	42.61	43.82
TraesCS1D01G310200.1	Wheat	nucleus	42.61	43.66
TraesCS1A01G310700.1	Wheat	nucleus	42.27	43.46
Os05t0494100-01	Rice	nucleus	42.61	42.76
OQU78230	Sorghum	nucleus	40.55	40.14
HORVU1Hr1G067990.1	Barley	nucleus	41.92	38.98
GSMUA_Achr4P00270_001	Banana	mitochondrion	33.68	36.98
Zm00001d038557_P001	Maize	golgi	41.58	35.8

Protein Annotations

Gene3D:1.10.20.10	MapMan:15.3.5.7.1.1	EnsemblPlantsGene:Bra038724	EnsemblPlants:Bra038724.1	EnsemblPlants:Bra038724.1-P	InterPro:CBFA_NFYB_domain
ncoils:Coil	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0046982	InterPro:Histone-fold	InterPro:IPR009072	UniProt:M4FCA8
PFAM:PF00808	PANTHER:PTHR10252	PANTHER:PTHR10252:SF70	SUPFAM:SSF47113	UniParc:UPI000254523A	SEG:seg

Description

AT3G12480 (E=7e-106) NF-YC11 | NF-YC11 (NUCLEAR FACTOR Y, SUBUNIT C11); DNA binding / transcription factor

Coordinates

chrA01:-:26425982..26427717

Molecular Weight (calculated)

32042.2 Da

IEP (calculated)

4.851

GRAVY (calculated)

-0.981

Length

291 amino acids

Sequence
(BLAST)

001: MRKKLDTRFP AARIKKIMQA DEDVGKIALA VPVLVSKSLE LFLQDLCDRT YEITRERGAK TVSSLHLKHC VERYNVFDFL REVVSKVPDY GQAQGQGHGT
101: GDVAMDDRTI SKRRKPISDE VNDSDEENKK SKTQEVGNAK PSGRGGRGRG RGRGRGGRAA KAAERENRNR EMDLETAMAE QPPPQDSSQM HVSVSSPQEN
201: EKKDADGGIA ASNEDAKQQL QSPKEGIDFD LNAESLDLNE TKPAPVAAAD AATTSDEYPG WPMELGKIDP TQLASLGKRI DEDEEDYDEE G

Best Arabidopsis Sequence Match ( AT3G12480.1 )
(BLAST)

001: MRKKLDTRFP AARIKKIMQA DEDVGKIALA VPVLVSKSLE LFLQDLCDRT YEITLERGAK TVSSLHLKHC VERYNVFDFL REVVSKVPDY GHSQGQGHGD
101: VTMDDRSISK RRKPISDEVN DSDEEYKKSK TQEIGSAKTS GRGGRGRGRG RGRGGRAAKA AEREGLNREM EVEAANSGQP PPEDNVKMHA SESSPQEDEK
201: KGIDGTAASN EDTKQHLQSP KEGIDFDLNA ESLDLNETKL APATGTTTTT TAATDSEEYS GWPMMDISKM DPAQLASLGK RIDEDEEDYD EEG

Arabidopsis Description

NF-YC11NF-YC11 [Source:UniProtKB/TrEMBL;Acc:A0A178VDL4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.