Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 6
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Bra018668.1-P | |
| Bra031606.1-P |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT4G14540.1 | Bra018668.1-P | AT1G07980.1 | 21798944 |
| AT4G14540.1 | Bra031606.1-P | AT1G07980.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY20167 | Canola | nucleus | 98.09 | 97.47 |
| Bra027199.1-P | Field mustard | nucleus | 93.63 | 86.47 |
| AT4G14540.1 | Thale cress | nucleus | 84.08 | 81.99 |
| Bra001615.1-P | Field mustard | nucleus | 89.17 | 74.07 |
| Bra005074.1-P | Field mustard | nucleus | 54.78 | 60.56 |
| Solyc12g006120.1.1 | Tomato | nucleus | 77.71 | 60.4 |
| Bra017473.1-P | Field mustard | nucleus | 70.06 | 59.78 |
| Bra022147.1-P | Field mustard | nucleus | 70.7 | 59.68 |
| PGSC0003DMT400010977 | Potato | nucleus | 70.7 | 54.68 |
| Bra006991.1-P | Field mustard | nucleus | 60.51 | 53.37 |
| Bra018585.1-P | Field mustard | nucleus | 43.95 | 52.27 |
| Bra017209.1-P | Field mustard | nucleus | 59.87 | 49.21 |
| Bra023095.1-P | Field mustard | nucleus | 62.42 | 49.0 |
| Bra000462.1-P | Field mustard | nucleus | 47.77 | 48.08 |
| Bra004428.1-P | Field mustard | nucleus | 44.59 | 45.16 |
| Bra013143.1-P | Field mustard | nucleus | 57.32 | 43.06 |
| VIT_12s0057g01010.t01 | Wine grape | nucleus | 79.62 | 42.81 |
| Bra037211.1-P | Field mustard | nucleus | 56.05 | 42.31 |
| Bra012301.1-P | Field mustard | nucleus | 43.95 | 34.5 |
| Bra017471.1-P | Field mustard | nucleus | 45.22 | 33.97 |
| Bra031356.1-P | Field mustard | nucleus | 42.04 | 30.84 |
| Bra024924.1-P | Field mustard | nucleus | 45.22 | 30.74 |
| Bra016397.1-P | Field mustard | cytosol | 36.94 | 30.21 |
| Bra009328.1-P | Field mustard | cytosol, nucleus, plastid | 23.57 | 22.29 |
| Bra005976.1-P | Field mustard | cytosol, nucleus, plastid | 21.02 | 21.57 |
| Bra035959.1-P | Field mustard | cytosol, nucleus, plastid | 22.93 | 21.43 |
| Bra028668.1-P | Field mustard | nucleus | 17.2 | 14.06 |
Protein Annotations
| Gene3D:1.10.20.10 | MapMan:15.5.51.2 | EnsemblPlantsGene:Bra021147 | EnsemblPlants:Bra021147.1 | EnsemblPlants:Bra021147.1-P | InterPro:CBFA_NFYB_domain |
| GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006355 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0043565 | GO:GO:0046982 | InterPro:Histone-fold |
| InterPro:IPR009072 | UniProt:M4DXA1 | PFAM:PF00808 | PRINTS:PR00615 | ScanProsite:PS00685 | PANTHER:PTHR11064 |
| PANTHER:PTHR11064:SF87 | SUPFAM:SSF47113 | InterPro:Transcrpt_fac_NFYB/HAP3_CS | UniParc:UPI0002543D98 | SEG:seg | : |
Description
AT4G14540 (E=6e-060) NF-YB3 | NF-YB3 (NUCLEAR FACTOR Y, SUBUNIT B3); transcription factor
Coordinates
chrA01:+:23739318..23739791
Molecular Weight (calculated)
16840.7 Da
IEP (calculated)
6.355
GRAVY (calculated)
-0.762
Length
157 amino acids
Sequence
(BLAST)
(BLAST)
001: MADSDNDSGG HKDGGGASPR EQDRFLPIAN ASRIMKKALP ANAKISKDAK ETVQECVSEF ISFVTGEASD KCQREKRKTI NGDDLLWAMT TLGFEDYVEP
101: LKVYLQKYRE VEGERMAPGG RQGDKEGGGG SGGGMYGGVV TMGHHHQGHV YGGSGMN
101: LKVYLQKYRE VEGERMAPGG RQGDKEGGGG SGGGMYGGVV TMGHHHQGHV YGGSGMN
001: MADSDNDSGG HKDGGNASTR EQDRFLPIAN VSRIMKKALP ANAKISKDAK ETVQECVSEF ISFITGEASD KCQREKRKTI NGDDLLWAMT TLGFEDYVEP
101: LKVYLQKYRE VEGEKTTTAG RQGDKEGGGG GGGAGSGSGG APMYGGGMVT TMGHQFSHHF S
101: LKVYLQKYRE VEGEKTTTAG RQGDKEGGGG GGGAGSGSGG APMYGGGMVT TMGHQFSHHF S
Arabidopsis Description
NFYB3Nuclear transcription factor Y subunit B-3 [Source:UniProtKB/Swiss-Prot;Acc:O23310]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.