Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 6
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| VIT_06s0004g03030.t01 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT4G14540.1 | VIT_06s0004g03030.t01 | AT1G07980.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc12g006120.1.1 | Tomato | nucleus | 56.51 | 81.68 |
| CDY21888 | Canola | nucleus | 43.15 | 80.25 |
| CDY20167 | Canola | nucleus | 43.15 | 79.75 |
| Bra021147.1-P | Field mustard | nucleus | 42.81 | 79.62 |
| AT4G14540.1 | Thale cress | nucleus | 43.15 | 78.26 |
| CDY30123 | Canola | nucleus | 44.18 | 78.18 |
| Bra027199.1-P | Field mustard | nucleus | 44.52 | 76.47 |
| CDX82424 | Canola | nucleus | 45.89 | 70.9 |
| CDX75855 | Canola | nucleus | 44.86 | 70.43 |
| PGSC0003DMT400010977 | Potato | nucleus | 47.6 | 68.47 |
| Bra001615.1-P | Field mustard | nucleus | 44.18 | 68.25 |
| VIT_00s0259g00180.t01 | Wine grape | nucleus | 47.26 | 66.67 |
| VIT_06s0004g03490.t01 | Wine grape | nucleus | 30.14 | 66.17 |
| VIT_19s0015g00440.t01 | Wine grape | nucleus | 46.92 | 65.24 |
| VIT_00s1287g00010.t01 | Wine grape | nucleus | 47.26 | 63.3 |
| VIT_08s0040g03260.t01 | Wine grape | nucleus | 32.19 | 58.39 |
| VIT_13s0019g03600.t01 | Wine grape | nucleus | 33.22 | 55.11 |
| VIT_05s0020g01350.t01 | Wine grape | nucleus | 25.68 | 54.35 |
| VIT_14s0060g02660.t01 | Wine grape | nucleus | 23.29 | 46.26 |
| VIT_07s0031g01460.t01 | Wine grape | nucleus | 32.88 | 46.15 |
| VIT_07s0104g01640.t01 | Wine grape | nucleus | 27.05 | 45.14 |
| VIT_01s0010g01910.t01 | Wine grape | cytosol | 23.29 | 44.74 |
| VIT_01s0010g01940.t01 | Wine grape | cytosol | 20.89 | 40.13 |
| VIT_00s0956g00020.t01 | Wine grape | nucleus | 26.71 | 36.97 |
| VIT_19s0015g00580.t01 | Wine grape | nucleus | 22.6 | 31.58 |
| VIT_17s0000g04350.t01 | Wine grape | cytosol, mitochondrion, nucleus | 15.07 | 28.39 |
| VIT_19s0015g00590.t01 | Wine grape | cytosol, mitochondrion, nucleus | 20.55 | 27.91 |
Protein Annotations
| Gene3D:1.10.20.10 | MapMan:15.5.51.2 | InterPro:CBFA_NFYB_domain | ProteinID:CCB51745 | ProteinID:CCB51745.1 | UniProt:F6HHP9 |
| EMBL:FN595759 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006355 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0016020 | GO:GO:0016021 |
| GO:GO:0043565 | GO:GO:0046982 | InterPro:Histone-fold | InterPro:IPR009072 | PFAM:PF00808 | PRINTS:PR00615 |
| ScanProsite:PS00685 | PANTHER:PTHR11064 | PANTHER:PTHR11064:SF87 | SUPFAM:SSF47113 | InterPro:Transcrpt_fac_NFYB/HAP3_CS | UniParc:UPI00021090A3 |
| ArrayExpress:VIT_12s0057g01010 | EnsemblPlantsGene:VIT_12s0057g01010 | EnsemblPlants:VIT_12s0057g01010.t01 | unigene:Vvi.25699 | SEG:seg | : |
Description
No Description!
Coordinates
chr12:+:9707752..9710605
Molecular Weight (calculated)
30642.0 Da
IEP (calculated)
8.596
GRAVY (calculated)
-0.641
Length
292 amino acids
Sequence
(BLAST)
(BLAST)
001: MADSDNDSGG HNNSNANSEL SAREQDRFLP IANVSRIMKK ALPANAKISK DAKETVQECV SEFISFITGE ASDKCQREKR KTINGDDLLW AMTTLGFEEY
101: VEPLKIYLQK YREMEGEKSS LGGRPGEKDG SGGGGAAAGG GGAMSSGSSG GFNGGGMYGG MMMMGHHQGQ AYGSGSFHHM SSSGSGGGGG GGVGKNNTGS
201: SSGGGGGVAS TVRSRLTGVF ILQSAKVLAF KKCTTVIKAQ SSNEPLYVLL NGHVRGSPKP KPMYAHDRQV MARKRRLTPN PIDNDDRECE DE
101: VEPLKIYLQK YREMEGEKSS LGGRPGEKDG SGGGGAAAGG GGAMSSGSSG GFNGGGMYGG MMMMGHHQGQ AYGSGSFHHM SSSGSGGGGG GGVGKNNTGS
201: SSGGGGGVAS TVRSRLTGVF ILQSAKVLAF KKCTTVIKAQ SSNEPLYVLL NGHVRGSPKP KPMYAHDRQV MARKRRLTPN PIDNDDRECE DE
001: MADSDNDSGG HKDGGNASTR EQDRFLPIAN VSRIMKKALP ANAKISKDAK ETVQECVSEF ISFITGEASD KCQREKRKTI NGDDLLWAMT TLGFEDYVEP
101: LKVYLQKYRE VEGEKTTTAG RQGDKEGGGG GGGAGSGSGG APMYGGGMVT TMGHQFSHHF S
101: LKVYLQKYRE VEGEKTTTAG RQGDKEGGGG GGGAGSGSGG APMYGGGMVT TMGHQFSHHF S
Arabidopsis Description
NFYB3Nuclear transcription factor Y subunit B-3 [Source:UniProtKB/Swiss-Prot;Acc:O23310]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.