Factsheet for VIT_07s0104g01640.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_05s0020g01350.t01	Wine grape	nucleus	54.29	68.84
GSMUA_Achr5P17480_001	Banana	nucleus	57.71	62.73
VIT_14s0060g02660.t01	Wine grape	nucleus	51.43	61.22
GSMUA_Achr11P...	Banana	nucleus	56.0	59.04
GSMUA_Achr8P10020_001	Banana	nucleus	56.0	56.0
VIT_01s0010g01910.t01	Wine grape	cytosol	48.0	55.26
VIT_06s0004g03490.t01	Wine grape	nucleus	41.71	54.89
Zm00001d011915_P001	Maize	nucleus	51.43	52.63
Os01t0935200-01	Rice	nucleus	53.14	52.54
Zm00001d042196_P001	Maize	nucleus	52.57	51.4
VIT_01s0010g01940.t01	Wine grape	cytosol	44.57	51.32
EES04176	Sorghum	nucleus	53.14	51.1
HORVU3Hr1G098500.1	Barley	nucleus	50.29	48.09
TraesCSU01G051000.1	Wheat	nucleus	50.29	48.09
TraesCSU01G050900.1	Wheat	nucleus	50.29	48.09
TraesCSU01G203900.1	Wheat	nucleus	50.29	48.09
TraesCS3D01G450100.1	Wheat	nucleus	50.29	47.83
TraesCS3A01G457100.1	Wheat	nucleus	50.29	46.32
VIT_08s0040g03260.t01	Wine grape	nucleus	41.14	44.72
VIT_13s0019g03600.t01	Wine grape	nucleus	41.71	41.48
VIT_07s0031g01460.t01	Wine grape	nucleus	46.29	38.94
VIT_00s0259g00180.t01	Wine grape	nucleus	45.71	38.65
VIT_19s0015g00440.t01	Wine grape	nucleus	46.29	38.57
VIT_00s1287g00010.t01	Wine grape	nucleus	45.71	36.7
VIT_00s0956g00020.t01	Wine grape	nucleus	39.43	32.7
VIT_19s0015g00580.t01	Wine grape	nucleus	36.57	30.62
VIT_19s0015g00590.t01	Wine grape	cytosol, mitochondrion, nucleus	35.43	28.84
VIT_12s0057g01010.t01	Wine grape	nucleus	45.14	27.05
VIT_17s0000g04350.t01	Wine grape	cytosol, mitochondrion, nucleus	19.43	21.94

Protein Annotations

Gene3D:1.10.20.10	EntrezGene:104879763	MapMan:15.5.51.2	EMBL:AM429706	ProteinID:CAN82321	ProteinID:CAN82321.1
InterPro:CBFA_NFYB_domain	ProteinID:CCB56752	ProteinID:CCB56752.1	ncoils:Coil	UniProt:F6HPZ6	EMBL:FN596005
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006355	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0043565	GO:GO:0046982	InterPro:Histone-fold
InterPro:IPR009072	PFAM:PF00808	PRINTS:PR00615	ScanProsite:PS00685	PANTHER:PTHR11064	PANTHER:PTHR11064:SF88
SUPFAM:SSF47113	InterPro:Transcrpt_fac_NFYB/HAP3_CS	UniParc:UPI0001983949	ArrayExpress:VIT_07s0104g01640	EnsemblPlantsGene:VIT_07s0104g01640	EnsemblPlants:VIT_07s0104g01640.t01
RefSeq:XP_010652046.1	:	:	:	:	:

Description

No Description!

Coordinates

chr7:+:2646221..2646890

Molecular Weight (calculated)

19713.1 Da

IEP (calculated)

5.729

GRAVY (calculated)

-0.866

Length

175 amino acids

Sequence
(BLAST)

001: MVDDIGTNAD RDYDHKYNYA GGSSVSAEDG IIKEQDRLLP IANVGRIMKQ ILPPNAKISK EAKETMQECV SEFISFVTGE ASDKCHKEKR KTVNGDDICW
101: ALGTLGFDDY AEPLKRYLHR YRELEGEKAN QSKASEENDE PSNYRGEPPM KHTVSPAPLK FNVLERSNSS LSKRL

Best Arabidopsis Sequence Match ( AT2G47810.1 )
(BLAST)

001: MAGNYHSFQN PIPRYQNYNF GSSSSNHQHE HDGLVVVVED QQQEESMMVK EQDRLLPIAN VGRIMKNILP ANAKVSKEAK ETMQECVSEF ISFVTGEASD
101: KCHKEKRKTV NGDDICWAMA NLGFDDYAAQ LKKYLHRYRV LEGEKPNHHG KGGPKSSPDN

Arabidopsis Description

NFYB5NF-YB5 [Source:UniProtKB/TrEMBL;Acc:A0A178VUG0]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.