Factsheet for VIT_19s0015g00580.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_19s0015g00590.t01	Wine grape	cytosol, mitochondrion, nucleus	72.73	70.7
VIT_06s0004g03490.t01	Wine grape	nucleus	29.67	46.62
VIT_00s0956g00020.t01	Wine grape	nucleus	44.98	44.55
VIT_14s0060g02660.t01	Wine grape	nucleus	29.19	41.5
VIT_05s0020g01350.t01	Wine grape	nucleus	26.32	39.86
VIT_13s0019g03600.t01	Wine grape	nucleus	31.1	36.93
VIT_08s0040g03260.t01	Wine grape	nucleus	28.23	36.65
VIT_07s0104g01640.t01	Wine grape	nucleus	30.62	36.57
VIT_01s0010g01910.t01	Wine grape	cytosol	26.32	36.18
VIT_01s0010g01940.t01	Wine grape	cytosol	25.84	35.53
VIT_19s0015g00440.t01	Wine grape	nucleus	33.97	33.81
Solyc02g032190.1.1	Tomato	cytosol, nucleus, plastid	15.31	33.68
Solyc10g009440.2.1	Tomato	plastid	36.84	32.35
Solyc05g005390.1.1	Tomato	nucleus, plastid	36.84	32.35
VIT_00s0259g00180.t01	Wine grape	nucleus	31.1	31.4
VIT_00s1287g00010.t01	Wine grape	nucleus	31.1	29.82
VIT_07s0031g01460.t01	Wine grape	nucleus	29.67	29.81
VIT_17s0000g04350.t01	Wine grape	cytosol, mitochondrion, nucleus	17.22	23.23
VIT_12s0057g01010.t01	Wine grape	nucleus	31.58	22.6

Protein Annotations

Gene3D:1.10.20.10	EntrezGene:100256650	wikigene:100256650	MapMan:15.5.51.2	InterPro:CBFA_NFYB_domain	ProteinID:CBI39743
ProteinID:CBI39743.3	UniProt:D7UAH8	EMBL:FN596747	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0043565	GO:GO:0046982	InterPro:Histone-fold	InterPro:IPR009072	EntrezGene:LOC100256650	wikigene:LOC100256650
PFAM:PF00808	PRINTS:PR00615	ScanProsite:PS00685	PANTHER:PTHR11064	PANTHER:PTHR11064:SF79	SUPFAM:SSF47113
InterPro:Transcrpt_fac_NFYB/HAP3_CS	UniParc:UPI00019857BC	ArrayExpress:VIT_19s0015g00580	EnsemblPlantsGene:VIT_19s0015g00580	EnsemblPlants:VIT_19s0015g00580.t01	RefSeq:XP_002265882
RefSeq:XP_002265882.1	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr19:+:8666997..8668364

Molecular Weight (calculated)

23394.4 Da

IEP (calculated)

6.249

GRAVY (calculated)

-0.735

Length

209 amino acids

Sequence
(BLAST)

001: MERDDDQFHG YRRKIPENSS TSALNPGATS SNPIETTAGV GQKQLPMEQY MPIANLTRVM RRVLPAHAKI SDDAKETVQE CVSEFISFIT SEANDRCHHE
101: LRKTITAEDV IAAMSKLGFD DYIDPLTLYL HRYRESENER DRMPLRRGRE YGSLGAAANY GPPPPPWTTL HIGSQQGLYD AAPIVTRDYF KEGSSAGGST
201: SSRLPPEYK

Best Arabidopsis Sequence Match ( AT5G47670.1 )
(BLAST)

001: MERGGFHGYR KLSVNNTTPS PPGLAANFLM AEGSMRPPEF NQPNKTSNGG EEECTVREQD RFMPIANVIR IMRRILPAHA KISDDSKETI QECVSEYISF
101: ITGEANERCQ REQRKTITAE DVLWAMSKLG FDDYIEPLTL YLHRYRELEG ERGVSCSAGS VSMTNGLVVK RPNGTMTEYG AYGPVPGIHM AQYHYRHQNG
201: FVFSGNEPNS KMSGSSSGAS GARVEVFPTQ QHKY

Arabidopsis Description

NFYB6Nuclear transcription factor Y subunit B-6 [Source:UniProtKB/Swiss-Prot;Acc:Q84W66]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.