Factsheet for VIT_13s0019g03600.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_06s0004g03490.t01	Wine grape	nucleus	64.2	84.96
Solyc04g009520.2.1	Tomato	nucleus	38.07	77.91
KRH34567	Soybean	nucleus	76.14	77.01
CDX74880	Canola	nucleus	61.36	76.06
KRG92229	Soybean	nucleus	74.43	75.72
Bra005074.1-P	Field mustard	nucleus	60.8	75.35
PGSC0003DMT400082465	Potato	nucleus	56.25	75.0
VIT_08s0040g03260.t01	Wine grape	nucleus	67.61	73.91
Solyc04g049910.2.1	Tomato	nucleus	67.05	71.52
KXG22176	Sorghum	nucleus	69.32	67.78
Zm00001d038397_P005	Maize	nucleus	67.61	66.85
TraesCS7A01G486400.1	Wheat	cytosol	39.77	66.04
AT2G38880.8	Thale cress	nucleus	61.36	65.85
Os05t0463800-02	Rice	nucleus	68.75	65.41
GSMUA_Achr8P17450_001	Banana	nucleus	71.02	64.43
TraesCS7B01G501400.1	Wheat	cytoskeleton, cytosol, nucleus	41.48	64.04
Zm00001d010574_P001	Maize	nucleus	67.61	63.64
CDY07691	Canola	nucleus	57.95	61.45
TraesCS1D01G287500.1	Wheat	nucleus	63.07	60.99
TraesCS1B01G297900.2	Wheat	nucleus	62.5	60.44
TraesCS1A01G288500.3	Wheat	nucleus	62.5	60.44
TraesCS5B01G454900.1	Wheat	cytoskeleton, cytosol, nucleus	41.48	59.84
CDY14422	Canola	nucleus	54.55	58.54
CDX91501	Canola	nucleus	66.48	55.19
VIT_05s0020g01350.t01	Wine grape	nucleus	41.48	52.9
VIT_00s0259g00180.t01	Wine grape	nucleus	54.55	46.38
VIT_19s0015g00440.t01	Wine grape	nucleus	53.98	45.24
VIT_00s1287g00010.t01	Wine grape	nucleus	54.55	44.04
HORVU1Hr1G071620.5	Barley	nucleus, plastid	62.5	43.65
VIT_14s0060g02660.t01	Wine grape	nucleus	35.8	42.86
VIT_07s0104g01640.t01	Wine grape	nucleus	41.48	41.71
VIT_07s0031g01460.t01	Wine grape	nucleus	47.16	39.9
VIT_01s0010g01910.t01	Wine grape	cytosol	34.09	39.47
VIT_01s0010g01940.t01	Wine grape	cytosol	31.82	36.84
VIT_12s0057g01010.t01	Wine grape	nucleus	55.11	33.22
VIT_00s0956g00020.t01	Wine grape	nucleus	39.77	33.18
VIT_19s0015g00580.t01	Wine grape	nucleus	36.93	31.1
VIT_19s0015g00590.t01	Wine grape	cytosol, mitochondrion, nucleus	34.09	27.91
VIT_17s0000g04350.t01	Wine grape	cytosol, mitochondrion, nucleus	22.73	25.81

Protein Annotations

Gene3D:1.10.20.10	EntrezGene:100259924	wikigene:100259924	MapMan:15.5.51.2	InterPro:CBFA_NFYB_domain	ProteinID:CBI31520
ProteinID:CBI31520.3	UniProt:D7TMF3	EMBL:FN595998	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006355	GO:GO:0006950	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009414	GO:GO:0009628	GO:GO:0009987	GO:GO:0043565	GO:GO:0046982	InterPro:Histone-fold
InterPro:IPR009072	EntrezGene:LOC100259924	wikigene:LOC100259924	PFAM:PF00808	PRINTS:PR00615	ScanProsite:PS00685
PANTHER:PTHR11064	PANTHER:PTHR11064:SF85	SUPFAM:SSF47113	TIGR:TC61311	InterPro:Transcrpt_fac_NFYB/HAP3_CS	UniParc:UPI00015CA051
ArrayExpress:VIT_13s0019g03600	EnsemblPlantsGene:VIT_13s0019g03600	EnsemblPlants:VIT_13s0019g03600.t01	RefSeq:XP_002278716	RefSeq:XP_002278716.1	RefSeq:XP_003633465
RefSeq:XP_003633465.1	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr13:+:4752948..4757974

Molecular Weight (calculated)

19172.3 Da

IEP (calculated)

6.946

GRAVY (calculated)

-0.776

Length

176 amino acids

Sequence
(BLAST)

001: MADGPASPPG GSHESGGDQS PRHNVREQDR YLPIANISRI MKKALPANGK IAKDAKDTVQ ECVSEFISFI TSEASDKCQK EKRKTINGDD LLWAMATLGF
101: EDYIEPLKVY LQRYREGDTR GSARGGDGSA RRDAIGSQPG PNAQFAHQGS FTQAMNYMNS QAQGQHLIVS PVQSSE

Best Arabidopsis Sequence Match ( AT2G37060.2 )
(BLAST)

001: MAESQAKSPG GCGSHESGGD QSPRSLHVRE QDRFLPIANI SRIMKRGLPA NGKIAKDAKE IVQECVSEFI SFVTSEASDK CQREKRKTIN GDDLLWAMAT
101: LGFEDYMEPL KVYLMRYREM EGDTKGSAKG GDPNAKKDGQ SSQNGQFSQL AHQGPYGNSQ AQQHMMVPMP GTD

Arabidopsis Description

NFYB8Nuclear transcription factor Y subunit B-8 [Source:UniProtKB/Swiss-Prot;Acc:Q8VYK4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.