Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 6
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra005074.1-P | Field mustard | nucleus | 81.1 | 93.66 |
| CDX74880 | Canola | nucleus | 81.1 | 93.66 |
| CDY07691 | Canola | nucleus | 79.88 | 78.92 |
| Solyc04g009520.2.1 | Tomato | nucleus | 39.02 | 74.42 |
| CDY14422 | Canola | nucleus | 74.39 | 74.39 |
| PGSC0003DMT400082465 | Potato | nucleus | 53.66 | 66.67 |
| Solyc04g049910.2.1 | Tomato | nucleus | 62.2 | 61.82 |
| CDX91501 | Canola | nucleus | 79.88 | 61.79 |
| KRH34567 | Soybean | nucleus | 65.24 | 61.49 |
| VIT_13s0019g03600.t01 | Wine grape | nucleus | 65.85 | 61.36 |
| TraesCS7A01G486400.1 | Wheat | cytosol | 39.63 | 61.32 |
| KRG92229 | Soybean | nucleus | 64.63 | 61.27 |
| KXG22176 | Sorghum | nucleus | 64.02 | 58.33 |
| Zm00001d038397_P005 | Maize | nucleus | 62.8 | 57.87 |
| TraesCS1D01G287500.1 | Wheat | nucleus | 63.41 | 57.14 |
| TraesCS7B01G501400.1 | Wheat | cytoskeleton, cytosol, nucleus | 39.63 | 57.02 |
| TraesCS1A01G288500.3 | Wheat | nucleus | 62.8 | 56.59 |
| TraesCS1B01G297900.2 | Wheat | nucleus | 62.8 | 56.59 |
| AT2G37060.2 | Thale cress | nucleus | 59.15 | 56.07 |
| Os05t0463800-02 | Rice | nucleus | 62.8 | 55.68 |
| Zm00001d010574_P001 | Maize | nucleus | 63.41 | 55.62 |
| AT4G14540.1 | Thale cress | nucleus | 54.27 | 55.28 |
| GSMUA_Achr8P17450_001 | Banana | nucleus | 63.41 | 53.61 |
| AT3G53340.5 | Thale cress | nucleus | 57.32 | 53.41 |
| TraesCS5B01G454900.1 | Wheat | cytoskeleton, cytosol, nucleus | 39.02 | 52.46 |
| AT5G47640.1 | Thale cress | nucleus | 54.27 | 46.84 |
| AT2G47810.1 | Thale cress | nucleus | 43.9 | 45.0 |
| AT1G09030.1 | Thale cress | nucleus | 34.76 | 41.01 |
| HORVU1Hr1G071620.5 | Barley | nucleus, plastid | 62.2 | 40.48 |
| AT2G13570.1 | Thale cress | nucleus | 46.95 | 35.81 |
| AT5G47670.3 | Thale cress | nucleus | 40.85 | 28.63 |
| AT1G21970.1 | Thale cress | nucleus | 39.02 | 26.89 |
| AT5G23090.1 | Thale cress | cytosol, nucleus, plastid | 23.78 | 24.53 |
| AT5G08190.1 | Thale cress | cytosol, nucleus, plastid | 23.17 | 23.31 |
Protein Annotations
| Gene3D:1.10.20.10 | MapMan:15.5.51.2 | EntrezGene:818472 | ProteinID:AEC09605.1 | ProteinID:ANM61325.1 | ArrayExpress:AT2G38880 |
| EnsemblPlantsGene:AT2G38880 | RefSeq:AT2G38880 | TAIR:AT2G38880 | RefSeq:AT2G38880-TAIR-G | EnsemblPlants:AT2G38880.8 | TAIR:AT2G38880.8 |
| Symbol:ATNF-YB1 | Unigene:At.24820 | InterPro:CBFA_NFYB_domain | UniProt:F4ITZ0 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003677 | GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006355 | GO:GO:0006950 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009414 | GO:GO:0009628 | GO:GO:0009987 | GO:GO:0016602 |
| GO:GO:0043565 | GO:GO:0046982 | InterPro:Histone-fold | InterPro:IPR009072 | Symbol:NF-YB1 | RefSeq:NP_001189705.1 |
| RefSeq:NP_001323550.1 | PFAM:PF00808 | PO:PO:0000005 | PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000230 |
| PO:PO:0000293 | PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 |
| PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 |
| PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 |
| PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 |
| PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 |
| PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025281 | PRINTS:PR00615 | ScanProsite:PS00685 | PANTHER:PTHR11064 |
| PANTHER:PTHR11064:SF85 | SUPFAM:SSF47113 | InterPro:Transcrpt_fac_NFYB/HAP3_CS | UniParc:UPI0001E92CC3 | SEG:seg | : |
Description
NF-YB1Nuclear factor Y, subunit B1 [Source:UniProtKB/TrEMBL;Acc:F4ITZ0]
Coordinates
chr2:+:16238492..16240781
Molecular Weight (calculated)
18004.1 Da
IEP (calculated)
4.637
GRAVY (calculated)
-0.557
Length
164 amino acids
Sequence
(BLAST)
(BLAST)
001: MADTPSSPAG DGGESGGSVR EQDRYLPIAN ISRIMKKALP PNGKIGKDAK DTVQECVSEF ISFITSEASD KCQKEKRKTV NGDDLLWAMA TLGFEDYLEP
101: LKIYLARYRE VFETNSVLFI PWDWLLTHHL LMQLEGDNKG SGKSGDGSNR DAGGGVSGEE MPSW
101: LKIYLARYRE VFETNSVLFI PWDWLLTHHL LMQLEGDNKG SGKSGDGSNR DAGGGVSGEE MPSW
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.