Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS1B01G297900.2 | Wheat | nucleus | 98.9 | 98.9 |
| TraesCS1A01G288500.3 | Wheat | nucleus | 98.35 | 98.35 |
| KXG22176 | Sorghum | nucleus | 85.71 | 86.67 |
| Zm00001d038397_P005 | Maize | nucleus | 83.52 | 85.39 |
| Os05t0463800-02 | Rice | nucleus | 85.16 | 83.78 |
| VIT_06s0004g03490.t01 | Wine grape | nucleus | 57.14 | 78.2 |
| Zm00001d010574_P001 | Maize | nucleus | 80.22 | 78.07 |
| TraesCS3D01G347000.1 | Wheat | nucleus | 69.23 | 77.3 |
| Solyc04g009520.2.1 | Tomato | nucleus | 34.62 | 73.26 |
| CDX74880 | Canola | nucleus | 56.59 | 72.54 |
| Bra005074.1-P | Field mustard | nucleus | 56.04 | 71.83 |
| PGSC0003DMT400004366 | Potato | nucleus | 54.95 | 71.43 |
| KRH32395 | Soybean | nucleus | 62.09 | 70.62 |
| HORVU1Hr1G071620.5 | Barley | nucleus, plastid | 96.15 | 69.44 |
| Solyc09g007290.2.1 | Tomato | nucleus | 47.25 | 66.67 |
| PGSC0003DMT400082465 | Potato | nucleus | 47.8 | 65.91 |
| VIT_08s0040g03260.t01 | Wine grape | nucleus | 58.24 | 65.84 |
| GSMUA_Achr8P17450_001 | Banana | nucleus | 69.78 | 65.46 |
| AT2G38880.8 | Thale cress | nucleus | 57.14 | 63.41 |
| VIT_13s0019g03600.t01 | Wine grape | nucleus | 60.99 | 63.07 |
| AT2G37060.2 | Thale cress | nucleus | 58.24 | 61.27 |
| Solyc04g049910.2.1 | Tomato | nucleus | 55.49 | 61.21 |
| CDY07691 | Canola | nucleus | 54.95 | 60.24 |
| Bra006991.1-P | Field mustard | nucleus | 57.69 | 58.99 |
| CDY18462 | Canola | nucleus | 56.59 | 58.86 |
| TraesCS1D01G419500.1 | Wheat | nucleus | 43.96 | 58.82 |
| AT3G53340.5 | Thale cress | nucleus | 56.04 | 57.95 |
| CDY14422 | Canola | nucleus | 50.0 | 55.49 |
| CDY72254 | Canola | nucleus | 56.04 | 54.84 |
| Bra017209.1-P | Field mustard | nucleus | 57.14 | 54.45 |
| Bra023095.1-P | Field mustard | nucleus | 59.34 | 54.0 |
| CDY18460 | Canola | nucleus | 57.14 | 53.61 |
| CDX91501 | Canola | nucleus | 57.69 | 49.53 |
| CDX79714 | Canola | nucleus | 58.24 | 47.75 |
| CDX73560 | Canola | nucleus | 57.69 | 45.85 |
| TraesCS2D01G180700.1 | Wheat | nucleus | 52.75 | 42.67 |
| CDX78169 | Canola | nucleus | 57.69 | 40.86 |
| TraesCS3D01G450100.1 | Wheat | nucleus | 41.21 | 40.76 |
| CDY46752 | Canola | nucleus | 59.34 | 40.45 |
| TraesCS2D01G358300.1 | Wheat | nucleus | 46.15 | 33.73 |
| TraesCS3D01G450000.1 | Wheat | cytosol, mitochondrion, nucleus, plastid | 31.32 | 33.14 |
| TraesCS6D01G268000.1 | Wheat | nucleus | 38.46 | 28.46 |
| TraesCS6D01G268100.1 | Wheat | cytosol, nucleus, plastid | 23.08 | 25.77 |
| TraesCS7D01G216600.1 | Wheat | nucleus | 34.07 | 21.16 |
| TraesCS7D01G216800.1 | Wheat | nucleus | 33.52 | 20.54 |
| TraesCS3D01G443500.1 | Wheat | cytosol, mitochondrion, nucleus | 21.43 | 13.09 |
Protein Annotations
| Gene3D:1.10.20.10 | MapMan:15.5.51.2 | InterPro:CBFA_NFYB_domain | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| GO:GO:0006139 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 |
| GO:GO:0043565 | GO:GO:0046982 | InterPro:Histone-fold | InterPro:IPR009072 | PFAM:PF00808 | PRINTS:PR00615 |
| ScanProsite:PS00685 | PANTHER:PTHR11064 | PANTHER:PTHR11064:SF37 | SUPFAM:SSF47113 | EnsemblPlantsGene:TraesCS1D01G287500 | EnsemblPlants:TraesCS1D01G287500.1 |
| InterPro:Transcrpt_fac_NFYB/HAP3_CS | SEG:seg | : | : | : | : |
Description
No Description!
Coordinates
chr1D:-:385809690..385812646
Molecular Weight (calculated)
18996.2 Da
IEP (calculated)
5.304
GRAVY (calculated)
-0.596
Length
182 amino acids
Sequence
(BLAST)
(BLAST)
001: MSDAPASPPG GGGGGGGGGS DDGGGGGGFG GVREQDRFLP IANISRIMKK AIPANGKIAK DAKETVQECV SEFISFITSE ASDKCQREKR KTINGDDLLW
101: AMATLGFEEY IEPLKVYLQK YRETEGDSKL AGKSGDVSVK KDALGPHGGS SGTSAQGMGQ QVAYNPGMVY MQPQYHNGDI SN
101: AMATLGFEEY IEPLKVYLQK YRETEGDSKL AGKSGDVSVK KDALGPHGGS SGTSAQGMGQ QVAYNPGMVY MQPQYHNGDI SN
001: MAESQAKSPG GCGSHESGGD QSPRSLHVRE QDRFLPIANI SRIMKRGLPA NGKIAKDAKE IVQECVSEFI SFVTSEASDK CQREKRKTIN GDDLLWAMAT
101: LGFEDYMEPL KVYLMRYREM EGDTKGSAKG GDPNAKKDGQ SSQNGQFSQL AHQGPYGNSQ AQQHMMVPMP GTD
101: LGFEDYMEPL KVYLMRYREM EGDTKGSAKG GDPNAKKDGQ SSQNGQFSQL AHQGPYGNSQ AQQHMMVPMP GTD
Arabidopsis Description
NFYB8Nuclear transcription factor Y subunit B-8 [Source:UniProtKB/Swiss-Prot;Acc:Q8VYK4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.