Factsheet for Bra023095.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
AT2G37060.2	Thale cress	nucleus	77.5	89.6
Bra017209.1-P	Field mustard	nucleus	74.0	77.49
CDX79714	Canola	nucleus	85.5	77.03
Bra006991.1-P	Field mustard	nucleus	68.0	76.4
PGSC0003DMT400004366	Potato	nucleus	52.5	75.0
CDY46752	Canola	nucleus	99.5	74.53
Solyc09g007290.2.1	Tomato	nucleus	48.0	74.42
VIT_08s0040g03260.t01	Wine grape	nucleus	59.5	73.91
Bra005074.1-P	Field mustard	nucleus	49.0	69.01
KXG22176	Sorghum	nucleus	59.0	65.56
Zm00001d038397_P005	Maize	nucleus	58.0	65.17
GSMUA_Achr8P17450_001	Banana	nucleus	61.0	62.89
Os05t0463800-02	Rice	nucleus	58.0	62.7
Bra021147.1-P	Field mustard	nucleus	49.0	62.42
TraesCS7A01G486400.1	Wheat	cytosol	33.0	62.26
TraesCS7B01G501400.1	Wheat	cytoskeleton, cytosol, nucleus	34.5	60.53
Zm00001d010574_P001	Maize	nucleus	56.5	60.43
TraesCS1D01G287500.1	Wheat	nucleus	54.0	59.34
TraesCS1A01G288500.3	Wheat	nucleus	54.0	59.34
TraesCS1B01G297900.2	Wheat	nucleus	53.5	58.79
TraesCS5B01G454900.1	Wheat	cytoskeleton, cytosol, nucleus	34.5	56.56
Bra027199.1-P	Field mustard	nucleus	47.5	55.88
Bra017473.1-P	Field mustard	nucleus	48.5	52.72
Bra022147.1-P	Field mustard	nucleus	47.5	51.08
Bra001615.1-P	Field mustard	nucleus	48.0	50.79
Bra018585.1-P	Field mustard	nucleus	31.0	46.97
Bra000462.1-P	Field mustard	nucleus	35.5	45.51
Bra004428.1-P	Field mustard	nucleus	33.5	43.23
HORVU1Hr1G071620.5	Barley	nucleus, plastid	54.0	42.86
Bra013143.1-P	Field mustard	nucleus	43.5	41.63
Bra037211.1-P	Field mustard	nucleus	42.5	40.87
Bra017471.1-P	Field mustard	nucleus	37.0	35.41
Bra012301.1-P	Field mustard	nucleus	33.5	33.5
Bra024924.1-P	Field mustard	nucleus	38.0	32.9
Bra031356.1-P	Field mustard	nucleus	33.0	30.84
Bra016397.1-P	Field mustard	cytosol	27.0	28.12
Bra005976.1-P	Field mustard	cytosol, nucleus, plastid	18.5	24.18
Bra009328.1-P	Field mustard	cytosol, nucleus, plastid	20.0	24.1
Bra035959.1-P	Field mustard	cytosol, nucleus, plastid	19.5	23.21
Bra028668.1-P	Field mustard	nucleus	13.5	14.06

Protein Annotations

Gene3D:1.10.20.10	MapMan:15.5.51.2	EnsemblPlantsGene:Bra023095	EnsemblPlants:Bra023095.1	EnsemblPlants:Bra023095.1-P	InterPro:CBFA_NFYB_domain
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006355	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0043565	GO:GO:0046982	InterPro:Histone-fold
InterPro:IPR009072	UniProt:M4E2U4	PFAM:PF00808	PRINTS:PR00615	ScanProsite:PS00685	PANTHER:PTHR11064
PANTHER:PTHR11064:SF85	SUPFAM:SSF47113	InterPro:Transcrpt_fac_NFYB/HAP3_CS	UniParc:UPI000253FF89	:	:

Description

AT2G37060 (E=5e-056) NF-YB8 | NF-YB8 (NUCLEAR FACTOR Y, SUBUNIT B8); transcription factor

Coordinates

chrA03:+:8665961..8667891

Molecular Weight (calculated)

22012.0 Da

IEP (calculated)

7.626

GRAVY (calculated)

-0.625

Length

200 amino acids

Sequence
(BLAST)

001: MAESQAKSPG GGESGGDQSP RSSSHVREQD RFLPIANISR IMKRGLPANG KIAKDAKEIV QECVSEFISF ITSEASDKCQ REKRKTINGD DLLWAMATLG
101: FEDYIDPLKV YLTRYRERVF GFHSLTLFFP FLFLRHELGT LQMEGDTKGS AKGGDANAKK DGQSSQNGQF SQLAHQGSFP QGPYGSSQGQ HMMVPMPGTD

Best Arabidopsis Sequence Match ( AT2G37060.2 )
(BLAST)

001: MAESQAKSPG GCGSHESGGD QSPRSLHVRE QDRFLPIANI SRIMKRGLPA NGKIAKDAKE IVQECVSEFI SFVTSEASDK CQREKRKTIN GDDLLWAMAT
101: LGFEDYMEPL KVYLMRYREM EGDTKGSAKG GDPNAKKDGQ SSQNGQFSQL AHQGPYGNSQ AQQHMMVPMP GTD

Arabidopsis Description

NFYB8Nuclear transcription factor Y subunit B-8 [Source:UniProtKB/Swiss-Prot;Acc:Q8VYK4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.