Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 6
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400082465 | Potato | nucleus | 71.43 | 75.76 |
| TraesCS7A01G486400.1 | Wheat | cytosol | 50.71 | 66.98 |
| TraesCS7B01G501400.1 | Wheat | cytoskeleton, cytosol, nucleus | 54.29 | 66.67 |
| VIT_08s0040g03260.t01 | Wine grape | nucleus | 71.43 | 62.11 |
| Solyc09g007290.2.1 | Tomato | nucleus | 56.43 | 61.24 |
| Zm00001d038397_P005 | Maize | nucleus | 77.14 | 60.67 |
| TraesCS5B01G454900.1 | Wheat | cytoskeleton, cytosol, nucleus | 52.86 | 60.66 |
| AT2G37060.2 | Thale cress | nucleus | 74.29 | 60.12 |
| KXG22176 | Sorghum | nucleus | 77.14 | 60.0 |
| CDY18462 | Canola | nucleus | 73.57 | 58.86 |
| AT3G53340.5 | Thale cress | nucleus | 73.57 | 58.52 |
| Os05t0463800-02 | Rice | nucleus | 77.14 | 58.38 |
| Bra006991.1-P | Field mustard | nucleus | 73.57 | 57.87 |
| Zm00001d010574_P001 | Maize | nucleus | 77.14 | 57.75 |
| GSMUA_Achr8P17450_001 | Banana | nucleus | 77.14 | 55.67 |
| TraesCS1D01G287500.1 | Wheat | nucleus | 71.43 | 54.95 |
| TraesCS1B01G297900.2 | Wheat | nucleus | 71.43 | 54.95 |
| TraesCS1A01G288500.3 | Wheat | nucleus | 70.71 | 54.4 |
| Bra017209.1-P | Field mustard | nucleus | 72.86 | 53.4 |
| CDY72254 | Canola | nucleus | 70.71 | 53.23 |
| CDY18460 | Canola | nucleus | 73.57 | 53.09 |
| Bra023095.1-P | Field mustard | nucleus | 75.0 | 52.5 |
| PGSC0003DMT400058414 | Potato | nucleus | 49.29 | 50.74 |
| PGSC0003DMT400057066 | Potato | nucleus | 63.57 | 48.11 |
| CDX79714 | Canola | nucleus | 75.0 | 47.3 |
| CDX73560 | Canola | nucleus | 73.57 | 44.98 |
| PGSC0003DMT400029608 | Potato | nucleus | 45.0 | 44.06 |
| PGSC0003DMT400010977 | Potato | nucleus | 63.57 | 43.84 |
| PGSC0003DMT400034611 | Potato | mitochondrion | 36.43 | 42.5 |
| PGSC0003DMT400095009 | Potato | nucleus | 55.71 | 40.84 |
| HORVU1Hr1G071620.5 | Barley | nucleus, plastid | 72.14 | 40.08 |
| CDX78169 | Canola | nucleus | 73.57 | 40.08 |
| PGSC0003DMT400063671 | Potato | nucleus | 39.29 | 39.86 |
| PGSC0003DMT400043176 | Potato | nucleus | 55.71 | 39.39 |
| CDY46752 | Canola | nucleus | 75.0 | 39.33 |
| PGSC0003DMT400035193 | Potato | cytosol, extracellular, nucleus | 17.86 | 37.88 |
| PGSC0003DMT400037958 | Potato | nucleus | 47.86 | 37.64 |
| PGSC0003DMT400035117 | Potato | nucleus | 43.57 | 34.08 |
| PGSC0003DMT400079574 | Potato | cytosol | 30.0 | 31.11 |
| PGSC0003DMT400084724 | Potato | endoplasmic reticulum, extracellular | 37.86 | 26.77 |
| PGSC0003DMT400035119 | Potato | nucleus | 29.29 | 25.47 |
| PGSC0003DMT400035125 | Potato | cytosol | 33.57 | 24.87 |
| PGSC0003DMT400059368 | Potato | cytosol | 25.71 | 23.23 |
| PGSC0003DMT400035129 | Potato | nucleus | 37.14 | 23.21 |
| PGSC0003DMT400010436 | Potato | cytosol, mitochondrion, nucleus | 25.71 | 22.78 |
| PGSC0003DMT400063256 | Potato | cytosol, nucleus, plastid | 25.0 | 22.01 |
| PGSC0003DMT400057379 | Potato | nucleus | 26.43 | 21.39 |
| PGSC0003DMT400035121 | Potato | nucleus | 16.43 | 14.94 |
| PGSC0003DMT400035028 | Potato | nucleus | 12.86 | 14.63 |
Protein Annotations
| Gene3D:1.10.20.10 | MapMan:15.5.51.2 | InterPro:CBFA_NFYB_domain | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| GO:GO:0006139 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 |
| GO:GO:0043565 | GO:GO:0046982 | InterPro:Histone-fold | InterPro:IPR009072 | UniProt:M0ZNB5 | PFAM:PF00808 |
| EnsemblPlantsGene:PGSC0003DMG400001733 | PGSC:PGSC0003DMG400001733 | EnsemblPlants:PGSC0003DMT400004366 | PRINTS:PR00615 | ScanProsite:PS00685 | PANTHER:PTHR11064 |
| PANTHER:PTHR11064:SF85 | SUPFAM:SSF47113 | InterPro:Transcrpt_fac_NFYB/HAP3_CS | UniParc:UPI0002950848 | : | : |
Description
Ccaat-binding transcription factor subunit A [Source:PGSC_GENE;Acc:PGSC0003DMG400001733]
Coordinates
chr9:-:6565725..6569593
Molecular Weight (calculated)
15510.5 Da
IEP (calculated)
8.203
GRAVY (calculated)
-0.424
Length
140 amino acids
Sequence
(BLAST)
(BLAST)
001: MADGQGSSRS PASPNGGGSH ESGGDQSPRS NVREQDRFLP IANISRIMKK ALPANGKIAK DAKETVQECV SEFISFITSE ASDKCQREKR KTINGDDLLW
101: AMATLGFEDY IEPLKVYLAR YREVMITKFL IQLSLVTLLQ
101: AMATLGFEDY IEPLKVYLAR YREVMITKFL IQLSLVTLLQ
001: MAESQAKSPG GCGSHESGGD QSPRSLHVRE QDRFLPIANI SRIMKRGLPA NGKIAKDAKE IVQECVSEFI SFVTSEASDK CQREKRKTIN GDDLLWAMAT
101: LGFEDYMEPL KVYLMRYREM EGDTKGSAKG GDPNAKKDGQ SSQNGQFSQL AHQGPYGNSQ AQQHMMVPMP GTD
101: LGFEDYMEPL KVYLMRYREM EGDTKGSAKG GDPNAKKDGQ SSQNGQFSQL AHQGPYGNSQ AQQHMMVPMP GTD
Arabidopsis Description
NFYB8Nuclear transcription factor Y subunit B-8 [Source:UniProtKB/Swiss-Prot;Acc:Q8VYK4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.