Factsheet for PGSC0003DMT400035028

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400035121	Potato	nucleus	69.11	55.19
PGSC0003DMT400035119	Potato	nucleus	65.85	50.31
PGSC0003DMT400035125	Potato	cytosol	72.36	47.09
Solyc05g005340.2.1	Tomato	extracellular	44.72	44.35
PGSC0003DMT400035129	Potato	nucleus	72.36	39.73
PGSC0003DMT400079574	Potato	cytosol	39.02	35.56
PGSC0003DMT400034611	Potato	mitochondrion	27.64	28.33
PGSC0003DMT400084724	Potato	endoplasmic reticulum, extracellular	38.21	23.74
VIT_00s0956g00020.t01	Wine grape	nucleus	36.59	21.33
PGSC0003DMT400035117	Potato	nucleus	30.89	21.23
CDY25952	Canola	nucleus	32.52	19.32
Bra017471.1-P	Field mustard	nucleus	31.71	18.66
CDY41063	Canola	nucleus	31.71	18.66
GSMUA_Achr3P04310_001	Banana	nucleus	31.71	18.4
KRH51197	Soybean	nucleus	33.33	18.39
KRH01950	Soybean	nucleus	33.33	18.14
AT5G47670.3	Thale cress	nucleus	34.15	17.95
Bra024924.1-P	Field mustard	nucleus	33.33	17.75
CDY17715	Canola	nucleus	33.33	17.75
PGSC0003DMT400029608	Potato	nucleus	17.07	14.69
PGSC0003DMT400057379	Potato	nucleus	20.33	14.45
PGSC0003DMT400058414	Potato	nucleus	15.45	13.97
PGSC0003DMT400004366	Potato	nucleus	14.63	12.86
PGSC0003DMT400082465	Potato	nucleus	13.01	12.12
PGSC0003DMT400057066	Potato	nucleus	17.89	11.89
PGSC0003DMT400059368	Potato	cytosol	13.82	10.97
PGSC0003DMT400037958	Potato	nucleus	15.45	10.67
PGSC0003DMT400043176	Potato	nucleus	17.07	10.61
PGSC0003DMT400095009	Potato	nucleus	14.63	9.42
PGSC0003DMT400063671	Potato	nucleus	10.57	9.42
PGSC0003DMT400010977	Potato	nucleus	15.45	9.36
PGSC0003DMT400010436	Potato	cytosol, mitochondrion, nucleus	11.38	8.86
PGSC0003DMT400063256	Potato	cytosol, nucleus, plastid	11.38	8.81
PGSC0003DMT400035193	Potato	cytosol, extracellular, nucleus	0.81	1.52

Protein Annotations

EnsemblPlants:PGSC0003DMT400035028	EnsemblPlantsGene:PGSC0003DMG400013472	Gene3D:1.10.20.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0046982	InterPro:Histone-fold	InterPro:IPR009072	PANTHER:PTHR11064	PANTHER:PTHR11064:SF20	PGSC:PGSC0003DMG400013472
SUPFAM:SSF47113	UniParc:UPI000296E2D2	UniProt:M1B1Q0	MapMan:35.2	:	:

Description

Leafy cotyledon 1 [Source:PGSC_GENE;Acc:PGSC0003DMG400013472]

Coordinates

chr5:+:8606007..8606832

Molecular Weight (calculated)

14325.8 Da

IEP (calculated)

6.222

GRAVY (calculated)

-0.857

Length

123 amino acids

Sequence
(BLAST)

001: MRSKRKQRNT ITIEDVHWVM SKFRFDDYTE PLTLYLHHYR EDDGGEHGSL REKYFLKRPM VDADLGCNIM PYHLPPNFPM AHHHFVYPPP MENGNMHGDA
101: SNGSTSQYAV DSDVEFPAEG VKE

Best Arabidopsis Sequence Match ( AT5G47670.2 )
(BLAST)

001: MAEGSMRPPE FNQPNKTSNG GEEECTVREQ DRFMPIANVI RIMRRILPAH AKISDDSKET IQECVSEYIS FITGEANERC QREQRKTITA EDVLWAMSKL
101: GFDDYIEPLT LYLHRYRELE GERGVSCSAG SVSMTNGLVV KRPNGTMTEY GAYGPVPGIH MAQYHYRHQN GFVFSGNEPN SKMSGSSSGA SGARVEVFPT
201: QQHKY

Arabidopsis Description

NFYB6Nuclear transcription factor Y subunit B-6 [Source:UniProtKB/Swiss-Prot;Acc:Q84W66]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.